RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 SCARB2Q14108 478 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 EGFLAMQ63HQ2 1017 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 TRIM74Q86UV6 250 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 OR4E2Q8NGC2 313 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 NODALQ96S42 347 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 TNFRSF10BO14763 440 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 ADAMDEC1O15204 470 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 SCELO95171 688 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 PGLSO95336 258 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 ALPPP05187 535 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 HERVK_113P63132 956 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 PUM1Q14671 1186 aaKnown RBP eCLIP18.3■□□□□ 0.524e-8■■□□□ 13.4
SMARCC1-201ENST00000254480 FBXO42Q6P3S6 717 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 CAND1Q86VP6 1230 aaKnown RBP18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 ERVK-6Q9BXR3 956 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 CNTN5O94779 1100 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 SMCO1Q147U7 214 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 CRTC2Q53ET0 693 aaPredicted RBP18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 ANKRD26P1Q6NSI1 321 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 COQ8BQ96D53 544 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 SIPA1Q96FS4 1042 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 COL21A1Q96P44 957 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 OR52B2Q96RD2 323 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 AKTIPQ9H8T0 292 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 TRNAU1APQ9NX07 287 aaKnown RBP18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 RIMKLBQ9ULI2 386 aa18.3■□□□□ 0.52
SMARCC1-201ENST00000254480 PUDPQ08623 228 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 SP140Q13342 867 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 SUSD1Q6UWL2 747 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 RASSF6Q6ZTQ3 369 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 RASGRP3Q8IV61 690 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 OR5T3Q8NGG3 340 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 EFHD2Q96C19 240 aaPredicted RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 ZBED6CLQ96FA7 236 aaPredicted RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 FUBP3Q96I24 572 aaKnown RBP eCLIP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 GPATCH1Q9BRR8 931 aaKnown RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 SLC35A5Q9BS91 424 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 KIF1AQ12756 1690 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 ZNF879B4DU55 563 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 SLC11A1P49279 550 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 IDNKQ5T6J7 187 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 C1orf52Q8N6N3 182 aaKnown RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 TLCD1Q96CP7 247 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 SUSD3Q96L08 255 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 ZFP3Q96NJ6 502 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 FBXL12Q9NXK8 326 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 PCDHGA12O60330 932 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 DIRAS1O95057 198 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 CSN2P05814 226 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 MLLT3P42568 568 aaPredicted RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 C5orf22Q49AR2 442 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 METTL21CQ5VZV1 264 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 PLET1Q6UQ28 207 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 LAPTM4BQ86VI4 370 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 HM13Q8TCT9 377 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 PIGUQ9H490 435 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 SNTG1Q9NSN8 517 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 CNTN3Q9P232 1028 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 REM1O75628 298 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 CCR8P51685 355 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 NXPE1Q8N323 547 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 C2orf15Q8WU43 125 aaKnown RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 DNAJA3Q96EY1 480 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 KCNA7Q96RP8 456 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 IL4I1Q96RQ9 567 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 PKP4Q99569 1192 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 GORASP1Q9BQQ3 440 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 ING3Q9NXR8 418 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 DPPA5A6NC42 116 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 PDGFRLQ15198 375 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 HCN3Q9P1Z3 774 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 GIMAP2Q9UG22 337 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 ZDHHC2Q9UIJ5 367 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 MRPS17Q9Y2R5 130 aaKnown RBP18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 CLCA3PQ9Y6N3 262 aa18.29■□□□□ 0.52
SMARCC1-201ENST00000254480 ZNF823P16415 610 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 SDC2P34741 201 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 KHKP50053 298 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 MLIPQ5VWP3 458 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 ZNF613Q6PF04 617 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 AKAP14Q86UN6 197 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 METTL27Q8N6F8 245 aaPredicted RBP18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 IRGMA1A4Y4 181 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 CBX5P45973 191 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 CHAF1BQ13112 559 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 CBFBQ13951 182 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 FRMD6Q96NE9 622 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 ZDHHC3Q9NYG2 299 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 GABRDO14764 452 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 ZNF432O94892 652 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 TYRP1P17643 537 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 HOXC12P31275 282 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 TGFBR2P37173 567 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 CDKN1CP49918 316 aaPredicted RBP18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 RAB8AP61006 207 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 UAP1L1Q3KQV9 507 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 MSS51Q4VC12 460 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 LRRC66Q68CR7 880 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 ULK3Q6PHR2 472 aa18.28■□□□□ 0.52
SMARCC1-201ENST00000254480 SLC2A7Q6PXP3 512 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms