RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	OSH2	Q12451	1283 aa		5.2	□□□□□ -1.58
PRE9	YGR135W	RVB2	Q12464	471 aa	Known RBP	5.2	□□□□□ -1.58
PRE9	YGR135W	LTE1	P07866	1435 aa		5.2	□□□□□ -1.58
PRE9	YGR135W	GAL11	P19659	1081 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	MCM5	P29496	775 aa	Known RBP	5.19	□□□□□ -1.58
PRE9	YGR135W	IRS4	P36115	615 aa	Known RBP	5.19	□□□□□ -1.58
PRE9	YGR135W	ECM2	P38241	364 aa	Known RBP	5.19	□□□□□ -1.58
PRE9	YGR135W	SNF7	P39929	240 aa	Known RBP	5.19	□□□□□ -1.58
PRE9	YGR135W	RSP5	P39940	809 aa	Known RBP	5.19	□□□□□ -1.58
PRE9	YGR135W	VPS27	P40343	622 aa	Known RBP	5.19	□□□□□ -1.58
PRE9	YGR135W	NTA1	P40354	457 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	LSB6	P42951	607 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	BUD9	P53226	547 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	YGR053C	P53234	283 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	DNM1	P54861	757 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	SPO75	Q07798	868 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	YSP2	Q06681	1438 aa		5.19	□□□□□ -1.58
PRE9	YGR135W	MSN1	P22148	382 aa		5.18	□□□□□ -1.58
PRE9	YGR135W	PSY2	P40164	858 aa		5.18	□□□□□ -1.58
PRE9	YGR135W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	5.18	□□□□□ -1.58	not detected
PRE9	YGR135W	YRB30	P53107	440 aa	Predicted RBP	5.18	□□□□□ -1.58
PRE9	YGR135W	MON1	P53129	644 aa		5.18	□□□□□ -1.58
PRE9	YGR135W	TIF6	Q12522	245 aa	Known RBP	5.18	□□□□□ -1.58
PRE9	YGR135W	FLP1	P03870	423 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	AI3	P03877	415 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	GCR1	P07261	785 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	ERR1	P0CX10	437 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	ERR2	P0CX11	437 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	RAD27	P26793	382 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	UGA4	P32837	571 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	DUT1	P33317	147 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	YBR184W	P38299	523 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	PMC1	P38929	1173 aa	Predicted RBP	5.17	□□□□□ -1.58
PRE9	YGR135W	YIL165C	P40446	119 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	RGD2	P43556	714 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	ULP1	Q02724	621 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	YPL109C	Q02981	657 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	YPL034W	Q03083	165 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	MRL1	Q06815	381 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	RTT10	Q08924	1013 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	ADR1	P07248	1323 aa		5.17	□□□□□ -1.58
PRE9	YGR135W	RAV1	P47104	1357 aa		5.16	□□□□□ -1.58
PRE9	YGR135W	MRP10	O75012	95 aa		5.16	□□□□□ -1.58
PRE9	YGR135W	YHR020W	P38708	688 aa	Known RBP	5.16	□□□□□ -1.58
PRE9	YGR135W	RRM3	P38766	723 aa		5.16	□□□□□ -1.58
PRE9	YGR135W	PPT1	P53043	513 aa		5.16	□□□□□ -1.58
PRE9	YGR135W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	5.16	□□□□□ -1.58	not detected
PRE9	YGR135W	ADI1	Q03677	179 aa		5.16	□□□□□ -1.58
PRE9	YGR135W	TMA46	Q12000	345 aa	Known RBP	5.16	□□□□□ -1.58
PRE9	YGR135W	NOP14	Q99207	810 aa	Known RBP	5.16	□□□□□ -1.58
PRE9	YGR135W	RTC1	Q08281	1341 aa		5.16	□□□□□ -1.58
PRE9	YGR135W	NUP157	P40064	1391 aa	Known RBP	5.16	□□□□□ -1.58
PRE9	YGR135W	YOR093C	Q12275	1648 aa		5.15	□□□□□ -1.58
PRE9	YGR135W	HSP60	P19882	572 aa	Known RBP	5.15	□□□□□ -1.59
PRE9	YGR135W	ROX1	P25042	368 aa		5.15	□□□□□ -1.59
PRE9	YGR135W	SFP1	P32432	683 aa		5.15	□□□□□ -1.59
PRE9	YGR135W	SFA1	P32771	386 aa		5.15	□□□□□ -1.59
PRE9	YGR135W	GGA2	P38817	585 aa	Known RBP	5.15	□□□□□ -1.59
PRE9	YGR135W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	5.15	□□□□□ -1.59	not detected
PRE9	YGR135W	NTE1	Q04958	1679 aa		5.15	□□□□□ -1.59
PRE9	YGR135W	RPO21	P04050	1733 aa	Known RBP	5.14	□□□□□ -1.59
PRE9	YGR135W	SAC7	P17121	654 aa		5.14	□□□□□ -1.59
PRE9	YGR135W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	5.14	□□□□□ -1.59	not detected
PRE9	YGR135W	SQT1	P35184	431 aa		5.14	□□□□□ -1.59
PRE9	YGR135W	TAF5	P38129	798 aa		5.14	□□□□□ -1.59
PRE9	YGR135W	PIC2	P40035	300 aa		5.14	□□□□□ -1.59
PRE9	YGR135W	KRI1	P42846	591 aa	Known RBP	5.14	□□□□□ -1.59
PRE9	YGR135W	KIP3	P53086	805 aa	Known RBP	5.14	□□□□□ -1.59
PRE9	YGR135W	PDR11	P40550	1411 aa		5.14	□□□□□ -1.59
PRE9	YGR135W	CIT1	P00890	479 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	ARE1	P25628	610 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	MNN4	P36044	1178 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	AIM46	P38885	310 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	XKS1	P42826	600 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	RSM26	P47141	266 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	ARI1	P53111	347 aa	Known RBP	5.13	□□□□□ -1.59
PRE9	YGR135W	TPO2	P53283	614 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	FOL1	P53848	824 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	EMG1	Q06287	252 aa	Known RBP	5.13	□□□□□ -1.59
PRE9	YGR135W	YDL144C	Q07589	356 aa		5.13	□□□□□ -1.59
PRE9	YGR135W	BUD3	P25558	1636 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	CAN1	P04817	590 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	SUI2	P20459	304 aa	Known RBP	5.12	□□□□□ -1.59
PRE9	YGR135W	RPL8B	P29453	256 aa	Known RBP	5.12	□□□□□ -1.59
PRE9	YGR135W	SEC6	P32844	805 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	STE5	P32917	917 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	GIP2	P40036	548 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	TED1	P40533	473 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	HUL4	P40985	892 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	YJL181W	P46987	611 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	SOK2	P53438	785 aa	Predicted RBP	5.12	□□□□□ -1.59
PRE9	YGR135W	YNR029C	P53729	429 aa	Known RBP	5.12	□□□□□ -1.59
PRE9	YGR135W	EEB1	Q02891	456 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	ECM16	Q04217	1267 aa	Known RBP	5.12	□□□□□ -1.59
PRE9	YGR135W	SPO20	Q04359	397 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	EAF1	Q06337	982 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	URN1	Q06525	465 aa	Known RBP	5.12	□□□□□ -1.59
PRE9	YGR135W	GAS5	Q08193	484 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	DRS2	P39524	1355 aa		5.12	□□□□□ -1.59
PRE9	YGR135W	TY4B-P	A0A0B7P3V8	1104 aa		5.11	□□□□□ -1.59

Retrieved 100 of 5,963 RNA–protein pairs in 18.3 ms