RNA–Protein interactions for RNA: YDR228C

PCF11, Transcript of mRNA 3' end processing factor, yeastyeast

Gene PCF11, Length 1,881 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PCF11YDR228C FYV10P40492 516 aa3.55□□□□□ -1.84
PCF11YDR228C TNA1P53322 534 aa3.55□□□□□ -1.84
PCF11YDR228C SNO2P53823 222 aa3.55□□□□□ -1.84
PCF11YDR228C NBA1Q08229 501 aaKnown RBP3.55□□□□□ -1.84
PCF11YDR228C HEM3P28789 327 aa3.54□□□□□ -1.84
PCF11YDR228C MCM2P29469 868 aa3.54□□□□□ -1.84
PCF11YDR228C FLR1P38124 548 aa3.54□□□□□ -1.84
PCF11YDR228C PIK1P39104 1066 aa3.54□□□□□ -1.84
PCF11YDR228C GPB2P39717 880 aa3.54□□□□□ -1.84
PCF11YDR228C COQ4O13525 335 aa3.54□□□□□ -1.84
PCF11YDR228C DED1P06634 604 aaKnown RBP3.54□□□□□ -1.84
PCF11YDR228C SPS1P08458 490 aa3.54□□□□□ -1.84
PCF11YDR228C RGD1P38339 666 aa3.54□□□□□ -1.84
PCF11YDR228C FOL2P51601 243 aaKnown RBP3.54□□□□□ -1.84
PCF11YDR228C YDR132CQ03900 495 aa3.54□□□□□ -1.84
PCF11YDR228C SPR28Q04921 423 aa3.54□□□□□ -1.84
PCF11YDR228C YPL277CQ08989 487 aa3.54□□□□□ -1.84
PCF11YDR228C CCZ1P38273 704 aa3.53□□□□□ -1.84
PCF11YDR228C SEC26P41810 973 aaKnown RBP3.53□□□□□ -1.84
PCF11YDR228C SPO21Q12411 609 aa3.53□□□□□ -1.84
PCF11YDR228C RPS13P05756 151 aaKnown RBP3.52□□□□□ -1.85
PCF11YDR228C SYP1P25623 870 aaKnown RBP3.52□□□□□ -1.85
PCF11YDR228C MPH1P40562 993 aa3.52□□□□□ -1.85
PCF11YDR228C CNN1P43618 361 aa3.52□□□□□ -1.85
PCF11YDR228C UBP3Q01477 912 aaKnown RBP RIP-Chip data3.52□□□□□ -1.85not detected
PCF11YDR228C MRL1Q06815 381 aa3.52□□□□□ -1.85
PCF11YDR228C YER152CP10356 443 aa3.52□□□□□ -1.85
PCF11YDR228C DBP5P20449 482 aaKnown RBP3.52□□□□□ -1.85
PCF11YDR228C GIP4P39732 760 aa3.52□□□□□ -1.85
PCF11YDR228C HNT2P49775 206 aa3.52□□□□□ -1.85
PCF11YDR228C RMD1Q03441 430 aa3.52□□□□□ -1.85
PCF11YDR228C PRE10P21242 288 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
PCF11YDR228C PUF4P25339 888 aaKnown RBP RIP-Chip data3.51□□□□□ -1.85not detected
PCF11YDR228C DUT1P33317 147 aa3.51□□□□□ -1.85
PCF11YDR228C RER2P35196 286 aa3.51□□□□□ -1.85
PCF11YDR228C YFL054CP43549 646 aa3.51□□□□□ -1.85
PCF11YDR228C ESF1Q06344 628 aaKnown RBP3.51□□□□□ -1.85
PCF11YDR228C RTT10Q08924 1013 aa3.51□□□□□ -1.85
PCF11YDR228C LAM1P38851 1228 aa3.5□□□□□ -1.85
PCF11YDR228C ATG13Q06628 738 aa3.5□□□□□ -1.85
PCF11YDR228C SRM1P21827 482 aa3.5□□□□□ -1.85
PCF11YDR228C MLS1P30952 554 aa3.5□□□□□ -1.85
PCF11YDR228C TOD6P34219 525 aa3.5□□□□□ -1.85
PCF11YDR228C YKL222CP35995 705 aa3.5□□□□□ -1.85
PCF11YDR228C MEF2P39677 819 aa3.5□□□□□ -1.85
PCF11YDR228C TIF35Q04067 274 aaKnown RBP3.5□□□□□ -1.85
PCF11YDR228C DUS4Q06063 367 aa3.5□□□□□ -1.85
PCF11YDR228C SGD1Q06132 899 aa3.5□□□□□ -1.85
PCF11YDR228C RIB2Q12362 591 aaKnown RBP3.5□□□□□ -1.85
PCF11YDR228C CYC1P00044 109 aaPredicted RBP3.49□□□□□ -1.85
PCF11YDR228C ASF1P32447 279 aa3.49□□□□□ -1.85
PCF11YDR228C GCN5Q03330 439 aa3.49□□□□□ -1.85
PCF11YDR228C PLB2Q03674 706 aa3.49□□□□□ -1.85
PCF11YDR228C CLU1Q03690 1277 aaKnown RBP3.49□□□□□ -1.85
PCF11YDR228C DOM34P33309 386 aa3.48□□□□□ -1.85
PCF11YDR228C RSB1Q08417 382 aa3.48□□□□□ -1.85
PCF11YDR228C TMA46Q12000 345 aaKnown RBP3.48□□□□□ -1.85
PCF11YDR228C YLR358CO13565 187 aa3.47□□□□□ -1.85
PCF11YDR228C SIZ1Q04195 904 aa3.47□□□□□ -1.85
PCF11YDR228C GNT1Q12096 491 aa3.47□□□□□ -1.85
PCF11YDR228C CDC6P09119 513 aa3.47□□□□□ -1.85
PCF11YDR228C RFC5P38251 354 aa3.47□□□□□ -1.85
PCF11YDR228C CDC34P14682 295 aa3.46□□□□□ -1.86
PCF11YDR228C DBP2P24783 546 aaKnown RBP3.46□□□□□ -1.86
PCF11YDR228C RAD27P26793 382 aa3.46□□□□□ -1.86
PCF11YDR228C PNT1P38969 423 aa3.46□□□□□ -1.86
PCF11YDR228C MET10P39692 1035 aa3.46□□□□□ -1.86
PCF11YDR228C EEB1Q02891 456 aa3.46□□□□□ -1.86
PCF11YDR228C RSM24Q03976 319 aa3.46□□□□□ -1.86
PCF11YDR228C RPL11AP0C0W9 174 aaKnown RBP3.45□□□□□ -1.86
PCF11YDR228C ACE2P21192 770 aa3.45□□□□□ -1.86
PCF11YDR228C BAS1P22035 811 aa3.45□□□□□ -1.86
PCF11YDR228C SLA2P33338 968 aa3.45□□□□□ -1.86
PCF11YDR228C MXR1P40029 184 aa3.45□□□□□ -1.86
PCF11YDR228C OYE2Q03558 400 aaKnown RBP3.45□□□□□ -1.86
PCF11YDR228C SVS1Q12254 260 aa3.45□□□□□ -1.86
PCF11YDR228C RPL11BQ3E757 174 aaPredicted RBP3.45□□□□□ -1.86
PCF11YDR228C TRP2P00899 507 aaKnown RBP3.45□□□□□ -1.86
PCF11YDR228C GAL10P04397 699 aa3.45□□□□□ -1.86
PCF11YDR228C LYP1P32487 611 aa3.45□□□□□ -1.86
PCF11YDR228C MNR2P35724 969 aa3.45□□□□□ -1.86
PCF11YDR228C TAT2P38967 592 aa3.45□□□□□ -1.86
PCF11YDR228C GEM1P39722 662 aa3.45□□□□□ -1.86
PCF11YDR228C MSC2Q03455 724 aa3.45□□□□□ -1.86
PCF11YDR228C ACM1Q08981 209 aa3.45□□□□□ -1.86
PCF11YDR228C CTS1P29029 562 aa3.44□□□□□ -1.86
PCF11YDR228C PEP7P32609 515 aa3.44□□□□□ -1.86
PCF11YDR228C UGA2P38067 497 aa3.44□□□□□ -1.86
PCF11YDR228C RRT14P40470 206 aa3.44□□□□□ -1.86
PCF11YDR228C SPT20P50875 604 aa3.44□□□□□ -1.86
PCF11YDR228C ROT1Q03691 256 aa3.44□□□□□ -1.86
PCF11YDR228C NAB6Q03735 1134 aaKnown RBP RIP-Chip data3.44□□□□□ -1.86not detected
PCF11YDR228C YPL066WQ12194 479 aa3.44□□□□□ -1.86
PCF11YDR228C KIN2P13186 1147 aaKnown RBP3.43□□□□□ -1.86
PCF11YDR228C CDC20P26309 610 aa3.43□□□□□ -1.86
PCF11YDR228C SHM2P37291 469 aaKnown RBP3.43□□□□□ -1.86
PCF11YDR228C MTC3P53077 123 aa3.43□□□□□ -1.86
PCF11YDR228C YGR053CP53234 283 aa3.43□□□□□ -1.86
PCF11YDR228C MAP1Q01662 387 aaKnown RBP RIP-Chip data3.43□□□□□ -1.86not detected
PCF11YDR228C BI4P03879 638 aa3.43□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 47.2 ms