RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 A0A1B0GTH6 734 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 PHF20L1A8MW92 1017 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 IGHA1P01876 353 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 PHKA2P46019 1235 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 FOXK2Q01167 660 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 SLFNL1Q499Z3 407 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 TPRNQ4KMQ1 711 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 GNASQ5JWF2 1037 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 TMEM214Q6NUQ4 689 aaKnown RBP7.88□□□□□ -1.15
SCN1A-211ENST00000635893 CFHR5Q9BXR6 569 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 DOLKQ9UPQ8 538 aa7.88□□□□□ -1.15
SCN1A-211ENST00000635893 IRF5Q13568 498 aa7.87□□□□□ -1.15
SCN1A-211ENST00000635893 TSGA10IPQ3SY00 556 aa7.87□□□□□ -1.15
SCN1A-211ENST00000635893 GPAT2Q6NUI2 795 aa7.87□□□□□ -1.15
SCN1A-211ENST00000635893 BEND7Q8N7W2 519 aaPredicted RBP7.87□□□□□ -1.15
SCN1A-211ENST00000635893 NEDD1Q8NHV4 660 aa7.87□□□□□ -1.15
SCN1A-211ENST00000635893 GPAMQ9HCL2 828 aa7.87□□□□□ -1.15
SCN1A-211ENST00000635893 LOC100996750A0A140TA64 210 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 THBS1P07996 1170 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 MAP2K3P46734 347 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 LBRQ14739 615 aaKnown RBP7.86□□□□□ -1.15
SCN1A-211ENST00000635893 PODNQ7Z5L7 613 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 RNF135Q8IUD6 432 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 SIRT1Q96EB6 747 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 KRTAP4-6Q9BYQ5 205 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 CHIC2Q9UKJ5 165 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 PHF24Q9UPV7 400 aa7.86□□□□□ -1.15
SCN1A-211ENST00000635893 CNTNAP5Q8WYK1 1306 aa7.85□□□□□ -1.15
SCN1A-211ENST00000635893 OIP5O43482 229 aa7.85□□□□□ -1.15
SCN1A-211ENST00000635893 C4orf17Q53FE4 359 aa7.85□□□□□ -1.15
SCN1A-211ENST00000635893 CSB-PGBD3P0DP91 1061 aa7.84□□□□□ -1.15
SCN1A-211ENST00000635893 PPARGC1BQ86YN6 1023 aaKnown RBP7.84□□□□□ -1.15
SCN1A-211ENST00000635893 PGBD3Q8N328 593 aa7.84□□□□□ -1.15
SCN1A-211ENST00000635893 OXCT2Q9BYC2 517 aaPredicted RBP7.84□□□□□ -1.15
SCN1A-211ENST00000635893 ETNK1Q9HBU6 452 aa7.84□□□□□ -1.15
SCN1A-211ENST00000635893 MSX1P28360 303 aa7.83□□□□□ -1.16
SCN1A-211ENST00000635893 VAC14Q08AM6 782 aa7.83□□□□□ -1.16
SCN1A-211ENST00000635893 TLR1Q15399 786 aa7.83□□□□□ -1.16
SCN1A-211ENST00000635893 OXLD1Q5BKU9 147 aa7.83□□□□□ -1.16
SCN1A-211ENST00000635893 RHBDD1Q8TEB9 315 aa7.83□□□□□ -1.16
SCN1A-211ENST00000635893 UBAP2LQ14157 1087 aaKnown RBP7.82□□□□□ -1.16
SCN1A-211ENST00000635893 EFHC2Q5JST6 749 aa7.82□□□□□ -1.16
SCN1A-211ENST00000635893 RUBCNLQ9H714 662 aa7.82□□□□□ -1.16
SCN1A-211ENST00000635893 GDPD2Q9HCC8 539 aa7.82□□□□□ -1.16
SCN1A-211ENST00000635893 STAU1O95793 577 aaKnown RBP7.81□□□□□ -1.16
SCN1A-211ENST00000635893 WASHC4Q2M389 1173 aa7.81□□□□□ -1.16
SCN1A-211ENST00000635893 MAP7D1Q3KQU3 841 aa7.81□□□□□ -1.16
SCN1A-211ENST00000635893 KLRG1Q96E93 195 aa7.81□□□□□ -1.16
SCN1A-211ENST00000635893 DCAF5Q96JK2 942 aa7.81□□□□□ -1.16
SCN1A-211ENST00000635893 ATXN7L1Q9ULK2 861 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-211ENST00000635893 ABL2P42684 1182 aa7.8□□□□□ -1.16
SCN1A-211ENST00000635893 CRISPLD1Q9H336 500 aa7.8□□□□□ -1.16
SCN1A-211ENST00000635893 GDF2Q9UK05 429 aaPredicted RBP7.8□□□□□ -1.16
SCN1A-211ENST00000635893 INHAP05111 366 aa7.79□□□□□ -1.16
SCN1A-211ENST00000635893 SOX11P35716 441 aa7.79□□□□□ -1.16
SCN1A-211ENST00000635893 SCNN1DP51172 638 aa7.79□□□□□ -1.16
SCN1A-211ENST00000635893 GDF10P55107 478 aa7.79□□□□□ -1.16
SCN1A-211ENST00000635893 PLA2G4EQ3MJ16 856 aa7.79□□□□□ -1.16
SCN1A-211ENST00000635893 GALNT6Q8NCL4 622 aa7.79□□□□□ -1.16
SCN1A-211ENST00000635893 SEMA3FQ13275 785 aa7.78□□□□□ -1.16
SCN1A-211ENST00000635893 TBC1D9Q6ZT07 1266 aa7.78□□□□□ -1.16
SCN1A-211ENST00000635893 GOLGA6L1Q8N7Z2 621 aa7.78□□□□□ -1.16
SCN1A-211ENST00000635893 PLPP7Q8NBV4 271 aa7.78□□□□□ -1.16
SCN1A-211ENST00000635893 ABHD17AQ96GS6 310 aa7.78□□□□□ -1.16
SCN1A-211ENST00000635893 NDFIP2Q9NV92 336 aa7.78□□□□□ -1.16
SCN1A-211ENST00000635893 SHISA8B8ZZ34 492 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 MSTNO14793 375 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 BNIP3LO60238 219 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 BMP4P12644 408 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 FGFR3P22607 806 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 PLA2G4AP47712 749 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 FIGNL1Q6PIW4 674 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 C1orf229Q6ZS94 237 aaPredicted RBP7.77□□□□□ -1.17
SCN1A-211ENST00000635893 C1orf216Q8TAB5 229 aa7.77□□□□□ -1.17
SCN1A-211ENST00000635893 NIFKQ9BYG3 293 aaKnown RBP7.77□□□□□ -1.17
SCN1A-211ENST00000635893 SMTNP53814 917 aa7.76□□□□□ -1.17
SCN1A-211ENST00000635893 SNRPNP63162 240 aaKnown RBP7.76□□□□□ -1.17
SCN1A-211ENST00000635893 EDARADDQ8WWZ3 215 aa7.76□□□□□ -1.17
SCN1A-211ENST00000635893 MKL2Q9ULH7 1088 aa7.76□□□□□ -1.17
SCN1A-211ENST00000635893 C2CD2LO14523 706 aa7.75□□□□□ -1.17
SCN1A-211ENST00000635893 MCM6Q14566 821 aa7.75□□□□□ -1.17
SCN1A-211ENST00000635893 NLRP8Q86W28 1048 aa7.75□□□□□ -1.17
SCN1A-211ENST00000635893 PCDHGC4Q9Y5F7 938 aa7.75□□□□□ -1.17
SCN1A-211ENST00000635893 ATP4AP20648 1035 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 CTBSQ01459 385 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 SLCO4C1Q6ZQN7 724 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 AIDAQ96BJ3 306 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 SLC4A9Q96Q91 983 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 SPOCK3Q9BQ16 436 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 ZCCHC2Q9C0B9 1178 aaKnown RBP7.74□□□□□ -1.17
SCN1A-211ENST00000635893 RRAGCQ9HB90 399 aa7.74□□□□□ -1.17
SCN1A-211ENST00000635893 DNAAF2Q9NVR5 837 aaKnown RBP7.74□□□□□ -1.17
SCN1A-211ENST00000635893 ITGB2P05107 769 aa7.73□□□□□ -1.17
SCN1A-211ENST00000635893 ALYREFQ86V81 257 aaKnown RBP7.73□□□□□ -1.17
SCN1A-211ENST00000635893 SERTAD1Q9UHV2 236 aa7.73□□□□□ -1.17
SCN1A-211ENST00000635893 GGA1Q9UJY5 639 aa7.73□□□□□ -1.17
SCN1A-211ENST00000635893 A6NJY4 79 aa7.72□□□□□ -1.17
SCN1A-211ENST00000635893 TMEM229AB2RXF0 380 aa7.72□□□□□ -1.17
SCN1A-211ENST00000635893 CDK2AP1O14519 115 aa7.72□□□□□ -1.17
SCN1A-211ENST00000635893 ARAFP10398 606 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms