RNA–Protein interactions for RNA: ENST00000617456.1

GPC6-202, Transcript of glypican 6, humanhuman

TSL 3 BASIC

Gene GPC6, Length 792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-202ENST00000617456 ASAP1Q9ULH1 1129 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 SPG7Q9UQ90 795 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 TOGARAM1Q9Y4F4 1720 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 UBR3Q6ZT12 1888 aa11.82□□□□□ -0.52
GPC6-202ENST00000617456 ITGB4P16144 1822 aa11.81□□□□□ -0.52
GPC6-202ENST00000617456 A0A0G2JLW4 131 aa11.81□□□□□ -0.52
GPC6-202ENST00000617456 APLP1P51693 650 aa11.81□□□□□ -0.52
GPC6-202ENST00000617456 BCS1LQ9Y276 419 aa11.81□□□□□ -0.52
GPC6-202ENST00000617456 NKX1-1Q15270 411 aaPredicted RBP11.8□□□□□ -0.52
GPC6-202ENST00000617456 ARHGAP27Q6ZUM4 889 aa11.8□□□□□ -0.52
GPC6-202ENST00000617456 NMRK2Q9NPI5 230 aa11.79□□□□□ -0.52
GPC6-202ENST00000617456 KIF24Q5T7B8 1368 aa11.79□□□□□ -0.52
GPC6-202ENST00000617456 PXDNLA1KZ92 1463 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 TOMM70O94826 608 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 FCHSD2O94868 740 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 TRAPPC3LQ5T215 181 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 EYA1Q99502 592 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 RBM42Q9BTD8 480 aaKnown RBP11.78□□□□□ -0.52
GPC6-202ENST00000617456 CARD14Q9BXL6 1004 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 ATG3Q9NT62 314 aa11.78□□□□□ -0.52
GPC6-202ENST00000617456 PHKG2P15735 406 aa11.77□□□□□ -0.53
GPC6-202ENST00000617456 DPEP1P16444 411 aa11.77□□□□□ -0.53
GPC6-202ENST00000617456 TGFB2P61812 414 aa11.77□□□□□ -0.53
GPC6-202ENST00000617456 IFNL2Q8IZJ0 200 aa11.77□□□□□ -0.53
GPC6-202ENST00000617456 RTCBQ9Y3I0 505 aaKnown RBP11.77□□□□□ -0.53
GPC6-202ENST00000617456 PKD1L3Q7Z443 1732 aa11.77□□□□□ -0.53
GPC6-202ENST00000617456 MAP2P11137 1827 aaKnown RBP11.76□□□□□ -0.53
GPC6-202ENST00000617456 KIF20BQ96Q89 1820 aa11.76□□□□□ -0.53
GPC6-202ENST00000617456 CICQ96RK0 1608 aaPredicted RBP11.76□□□□□ -0.53
GPC6-202ENST00000617456 HTRA3P83110 453 aa11.76□□□□□ -0.53
GPC6-202ENST00000617456 C16orf71Q8IYS4 520 aaPredicted RBP11.76□□□□□ -0.53
GPC6-202ENST00000617456 NLGN1Q8N2Q7 840 aa11.76□□□□□ -0.53
GPC6-202ENST00000617456 DNAJC5GQ8N7S2 189 aa11.76□□□□□ -0.53
GPC6-202ENST00000617456 CCDC87Q9NVE4 849 aa11.76□□□□□ -0.53
GPC6-202ENST00000617456 N4BP2Q86UW6 1770 aaPredicted RBP11.75□□□□□ -0.53
GPC6-202ENST00000617456 RFC4P35249 363 aa11.75□□□□□ -0.53
GPC6-202ENST00000617456 C9orf131Q5VYM1 1079 aa11.75□□□□□ -0.53
GPC6-202ENST00000617456 ARHGEF1Q92888 912 aaKnown RBP11.75□□□□□ -0.53
GPC6-202ENST00000617456 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.75□□□□□ -0.53
GPC6-202ENST00000617456 PARP3Q9Y6F1 533 aa11.75□□□□□ -0.53
GPC6-202ENST00000617456 WASHC2AQ641Q2 1341 aa11.75□□□□□ -0.53
GPC6-202ENST00000617456 NCAPD2Q15021 1401 aa11.75□□□□□ -0.53
GPC6-202ENST00000617456 TNNT2P45379 298 aaPredicted RBP11.74□□□□□ -0.53
GPC6-202ENST00000617456 SLC4A9Q96Q91 983 aa11.74□□□□□ -0.53
GPC6-202ENST00000617456 C10orf71Q711Q0 1435 aa11.74□□□□□ -0.53
GPC6-202ENST00000617456 GYS1P13807 737 aa11.73□□□□□ -0.53
GPC6-202ENST00000617456 RBM46Q8TBY0 533 aaKnown RBP11.73□□□□□ -0.53
GPC6-202ENST00000617456 FOXD4L1Q9NU39 408 aa11.73□□□□□ -0.53
GPC6-202ENST00000617456 POLKQ9UBT6 870 aa11.73□□□□□ -0.53
GPC6-202ENST00000617456 KDRP35968 1356 aa11.72□□□□□ -0.53
GPC6-202ENST00000617456 CAPN15O75808 1086 aa11.72□□□□□ -0.53
GPC6-202ENST00000617456 EIF4A2Q14240 407 aaKnown RBP11.72□□□□□ -0.53
GPC6-202ENST00000617456 POLR3GLQ9BT43 218 aa11.72□□□□□ -0.53
GPC6-202ENST00000617456 PCGF6Q9BYE7 350 aa11.72□□□□□ -0.53
GPC6-202ENST00000617456 RPS6KA4O75676 772 aa11.71□□□□□ -0.53
GPC6-202ENST00000617456 KCNA3P22001 575 aa11.71□□□□□ -0.53
GPC6-202ENST00000617456 CABP4P57796 275 aa11.71□□□□□ -0.53
GPC6-202ENST00000617456 EIF4G2P78344 907 aaKnown RBP eCLIP11.71□□□□□ -0.53
GPC6-202ENST00000617456 RC3H1Q5TC82 1133 aaKnown RBP11.71□□□□□ -0.53
GPC6-202ENST00000617456 RNF181Q9P0P0 153 aa11.71□□□□□ -0.53
GPC6-202ENST00000617456 SRP68Q9UHB9 627 aaKnown RBP11.71□□□□□ -0.53
GPC6-202ENST00000617456 KIF13BQ9NQT8 1826 aa11.71□□□□□ -0.54
GPC6-202ENST00000617456 KIAA1551Q9HCM1 1747 aa11.71□□□□□ -0.54
GPC6-202ENST00000617456 CNTNAP4Q9C0A0 1308 aa11.7□□□□□ -0.54
GPC6-202ENST00000617456 ERVV-2B6SEH9 535 aa11.7□□□□□ -0.54
GPC6-202ENST00000617456 PTCD1O75127 700 aaKnown RBP11.7□□□□□ -0.54
GPC6-202ENST00000617456 DALRD3Q5D0E6 543 aaKnown RBP11.7□□□□□ -0.54
GPC6-202ENST00000617456 COL13A1Q5TAT6 717 aaPredicted RBP11.7□□□□□ -0.54
GPC6-202ENST00000617456 ZNF530Q6P9A1 599 aaPredicted RBP11.7□□□□□ -0.54
GPC6-202ENST00000617456 KLRG1Q96E93 195 aa11.7□□□□□ -0.54
GPC6-202ENST00000617456 RRAGCQ9HB90 399 aa11.7□□□□□ -0.54
GPC6-202ENST00000617456 PIM2Q9P1W9 311 aa11.7□□□□□ -0.54
GPC6-202ENST00000617456 C4AP0C0L4 1744 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 PLEKHG2Q9H7P9 1386 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 HSP90AB1P08238 724 aaKnown RBP11.69□□□□□ -0.54
GPC6-202ENST00000617456 CHRNA5P30532 468 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 FSTL1Q12841 308 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 FKBP8Q14318 412 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 PLEKHO1Q53GL0 409 aaPredicted RBP11.69□□□□□ -0.54
GPC6-202ENST00000617456 DCAF5Q96JK2 942 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 ANP32EQ9BTT0 268 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 KCPQ6ZWJ8 1503 aa11.69□□□□□ -0.54
GPC6-202ENST00000617456 KDM2BQ8NHM5 1336 aa11.68□□□□□ -0.54
GPC6-202ENST00000617456 CRKLP46109 303 aaKnown RBP11.68□□□□□ -0.54
GPC6-202ENST00000617456 DDR1Q08345 913 aa11.68□□□□□ -0.54
GPC6-202ENST00000617456 CCER1Q8TC90 406 aaPredicted RBP11.68□□□□□ -0.54
GPC6-202ENST00000617456 WDR90Q96KV7 1748 aa11.67□□□□□ -0.54
GPC6-202ENST00000617456 MTHFSP49914 203 aa11.67□□□□□ -0.54
GPC6-202ENST00000617456 ANKRD26Q9UPS8 1709 aa11.66□□□□□ -0.54
GPC6-202ENST00000617456 USP42Q9H9J4 1324 aaKnown RBP11.66□□□□□ -0.54
GPC6-202ENST00000617456 RASSF7Q02833 373 aa11.66□□□□□ -0.54
GPC6-202ENST00000617456 C1orf141Q5JVX7 400 aa11.66□□□□□ -0.54
GPC6-202ENST00000617456 JMYQ8N9B5 988 aa11.66□□□□□ -0.54
GPC6-202ENST00000617456 MYH14Q7Z406 1995 aaKnown RBP11.66□□□□□ -0.54
GPC6-202ENST00000617456 KDM6AO15550 1401 aaPredicted RBP11.66□□□□□ -0.54
GPC6-202ENST00000617456 TNS4Q8IZW8 715 aa11.65□□□□□ -0.54
GPC6-202ENST00000617456 NFATC2IPQ8NCF5 419 aa11.65□□□□□ -0.54
GPC6-202ENST00000617456 BRCA1P38398 1863 aaKnown RBP11.65□□□□□ -0.54
GPC6-202ENST00000617456 COL5A3P25940 1745 aaPredicted RBP11.64□□□□□ -0.55
GPC6-202ENST00000617456 POLRMTO00411 1230 aaKnown RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms