RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 BEND7Q8N7W2 519 aaPredicted RBP8.67□□□□□ -1.02
LINC00540-201ENST00000611481 NEDD1Q8NHV4 660 aa8.67□□□□□ -1.02
LINC00540-201ENST00000611481 GTPBP3Q969Y2 492 aaKnown RBP8.67□□□□□ -1.02
LINC00540-201ENST00000611481 GAS2L1Q99501 681 aaPredicted RBP8.67□□□□□ -1.02
LINC00540-201ENST00000611481 CLN3Q13286 438 aa8.66□□□□□ -1.02
LINC00540-201ENST00000611481 WDR44Q5JSH3 913 aa8.66□□□□□ -1.02
LINC00540-201ENST00000611481 NBPF10Q6P3W6 841 aaKnown RBP8.66□□□□□ -1.02
LINC00540-201ENST00000611481 CYP2U1Q7Z449 544 aa8.66□□□□□ -1.02
LINC00540-201ENST00000611481 NBPF15Q8N660 670 aa8.66□□□□□ -1.02
LINC00540-201ENST00000611481 ZNF592Q92610 1267 aa8.66□□□□□ -1.02
LINC00540-201ENST00000611481 GRIP2Q9C0E4 1043 aa8.66□□□□□ -1.02
LINC00540-201ENST00000611481 NSFL1CQ9UNZ2 370 aaKnown RBP8.66□□□□□ -1.02
LINC00540-201ENST00000611481 CNTNAP5Q8WYK1 1306 aa8.65□□□□□ -1.02
LINC00540-201ENST00000611481 GJD4Q96KN9 370 aaPredicted RBP8.65□□□□□ -1.02
LINC00540-201ENST00000611481 ESF1Q9H501 851 aaKnown RBP8.65□□□□□ -1.02
LINC00540-201ENST00000611481 LRRC4BQ9NT99 713 aa8.65□□□□□ -1.02
LINC00540-201ENST00000611481 ACDQ96AP0 544 aa8.64□□□□□ -1.03
LINC00540-201ENST00000611481 DCAF5Q96JK2 942 aa8.64□□□□□ -1.03
LINC00540-201ENST00000611481 SPATA31C2B4DYI2 1134 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 MSTNO14793 375 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 MX2P20592 715 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 TIMMDC1Q9NPL8 285 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 ZNF330Q9Y3S2 320 aaPredicted RBP8.63□□□□□ -1.03
LINC00540-201ENST00000611481 PCDHB11Q9Y5F2 797 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 CLASP1Q7Z460 1538 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 AQRO60306 1485 aaKnown RBP eCLIP8.63□□□□□ -1.03
LINC00540-201ENST00000611481 GAPVD1Q14C86 1478 aa8.63□□□□□ -1.03
LINC00540-201ENST00000611481 DISP3Q9P2K9 1392 aa8.62□□□□□ -1.03
LINC00540-201ENST00000611481 F11P03951 625 aa8.62□□□□□ -1.03
LINC00540-201ENST00000611481 SCTRP47872 440 aa8.62□□□□□ -1.03
LINC00540-201ENST00000611481 NR1H3Q13133 447 aa8.62□□□□□ -1.03
LINC00540-201ENST00000611481 PLA2G4EQ3MJ16 856 aa8.62□□□□□ -1.03
LINC00540-201ENST00000611481 TAS1R3Q7RTX0 852 aa8.62□□□□□ -1.03
LINC00540-201ENST00000611481 NUCKS1Q9H1E3 243 aaKnown RBP8.62□□□□□ -1.03
LINC00540-201ENST00000611481 WASLO00401 505 aaPredicted RBP8.61□□□□□ -1.03
LINC00540-201ENST00000611481 TRAK2O60296 914 aa8.61□□□□□ -1.03
LINC00540-201ENST00000611481 OSBPL3Q9H4L5 887 aa8.61□□□□□ -1.03
LINC00540-201ENST00000611481 ARHGEF10LQ9HCE6 1279 aa8.61□□□□□ -1.03
LINC00540-201ENST00000611481 CFTRP13569 1480 aa8.6□□□□□ -1.03
LINC00540-201ENST00000611481 KIF13AQ9H1H9 1805 aa8.6□□□□□ -1.03
LINC00540-201ENST00000611481 SYNJ2O15056 1496 aa8.59□□□□□ -1.03
LINC00540-201ENST00000611481 OIP5O43482 229 aa8.59□□□□□ -1.03
LINC00540-201ENST00000611481 MAP2K3P46734 347 aa8.59□□□□□ -1.03
LINC00540-201ENST00000611481 SPOCK3Q9BQ16 436 aa8.59□□□□□ -1.03
LINC00540-201ENST00000611481 MROH2BQ7Z745 1585 aa8.59□□□□□ -1.03
LINC00540-201ENST00000611481 GNRH1P01148 92 aa8.58□□□□□ -1.04
LINC00540-201ENST00000611481 CFHR5Q9BXR6 569 aa8.58□□□□□ -1.04
LINC00540-201ENST00000611481 OXCT2Q9BYC2 517 aaPredicted RBP8.58□□□□□ -1.04
LINC00540-201ENST00000611481 ESYT1Q9BSJ8 1104 aa8.57□□□□□ -1.04
LINC00540-201ENST00000611481 PHF24Q9UPV7 400 aa8.57□□□□□ -1.04
LINC00540-201ENST00000611481 ADGRL1O94910 1474 aa8.57□□□□□ -1.04
LINC00540-201ENST00000611481 SYNJ1O43426 1573 aa8.56□□□□□ -1.04
LINC00540-201ENST00000611481 ITGB2P05107 769 aa8.56□□□□□ -1.04
LINC00540-201ENST00000611481 CNKSR1Q969H4 720 aa8.56□□□□□ -1.04
LINC00540-201ENST00000611481 RAB6BQ9NRW1 208 aa8.56□□□□□ -1.04
LINC00540-201ENST00000611481 KDM6BO15054 1643 aa8.55□□□□□ -1.04
LINC00540-201ENST00000611481 ADAM23O75077 832 aa8.55□□□□□ -1.04
LINC00540-201ENST00000611481 CENPCQ03188 943 aa8.55□□□□□ -1.04
LINC00540-201ENST00000611481 GALNT6Q8NCL4 622 aa8.55□□□□□ -1.04
LINC00540-201ENST00000611481 BANK1Q8NDB2 785 aa8.55□□□□□ -1.04
LINC00540-201ENST00000611481 GPAMQ9HCL2 828 aa8.55□□□□□ -1.04
LINC00540-201ENST00000611481 A0A1B0GTH6 734 aa8.54□□□□□ -1.04
LINC00540-201ENST00000611481 MYCP01106 439 aaPredicted RBP8.54□□□□□ -1.04
LINC00540-201ENST00000611481 IL2RAP01589 272 aa8.54□□□□□ -1.04
LINC00540-201ENST00000611481 GTF2E1P29083 439 aaPredicted RBP8.54□□□□□ -1.04
LINC00540-201ENST00000611481 IL27Q8NEV9 243 aa8.54□□□□□ -1.04
LINC00540-201ENST00000611481 CHMP7Q8WUX9 453 aaPredicted RBP8.54□□□□□ -1.04
LINC00540-201ENST00000611481 BCANQ96GW7 911 aa8.54□□□□□ -1.04
LINC00540-201ENST00000611481 ZSCAN10Q96SZ4 725 aaPredicted RBP8.54□□□□□ -1.04
LINC00540-201ENST00000611481 NDUFB9Q9Y6M9 179 aa8.54□□□□□ -1.04
LINC00540-201ENST00000611481 APBB1O00213 710 aa8.53□□□□□ -1.04
LINC00540-201ENST00000611481 PROCP04070 461 aa8.53□□□□□ -1.04
LINC00540-201ENST00000611481 FAM69CQ0P6D2 419 aa8.53□□□□□ -1.04
LINC00540-201ENST00000611481 GNASQ5JWF2 1037 aa8.53□□□□□ -1.04
LINC00540-201ENST00000611481 TOPBP1Q92547 1522 aa8.53□□□□□ -1.04
LINC00540-201ENST00000611481 THBS1P07996 1170 aa8.52□□□□□ -1.05
LINC00540-201ENST00000611481 PHKA2P46019 1235 aa8.52□□□□□ -1.05
LINC00540-201ENST00000611481 SNRPNP63162 240 aaKnown RBP8.52□□□□□ -1.05
LINC00540-201ENST00000611481 LBRQ14739 615 aaKnown RBP8.52□□□□□ -1.05
LINC00540-201ENST00000611481 NEUROD2Q15784 382 aa8.52□□□□□ -1.05
LINC00540-201ENST00000611481 TMEM214Q6NUQ4 689 aaKnown RBP8.52□□□□□ -1.05
LINC00540-201ENST00000611481 KLRG1Q96E93 195 aa8.52□□□□□ -1.05
LINC00540-201ENST00000611481 XAGE2Q96GT9 111 aa8.52□□□□□ -1.05
LINC00540-201ENST00000611481 GDF2Q9UK05 429 aaPredicted RBP8.52□□□□□ -1.05
LINC00540-201ENST00000611481 MKL2Q9ULH7 1088 aa8.52□□□□□ -1.05
LINC00540-201ENST00000611481 GPR37L1O60883 481 aa8.51□□□□□ -1.05
LINC00540-201ENST00000611481 CSB-PGBD3P0DP91 1061 aa8.51□□□□□ -1.05
LINC00540-201ENST00000611481 ALYREFQ86V81 257 aaKnown RBP8.51□□□□□ -1.05
LINC00540-201ENST00000611481 PGBD3Q8N328 593 aa8.51□□□□□ -1.05
LINC00540-201ENST00000611481 CEP126Q9P2H0 1117 aa8.51□□□□□ -1.05
LINC00540-201ENST00000611481 HRH3Q9Y5N1 445 aa8.51□□□□□ -1.05
LINC00540-201ENST00000611481 SNAPC4Q5SXM2 1469 aa8.51□□□□□ -1.05
LINC00540-201ENST00000611481 SHISA8B8ZZ34 492 aa8.5□□□□□ -1.05
LINC00540-201ENST00000611481 ESCO1Q5FWF5 840 aa8.5□□□□□ -1.05
LINC00540-201ENST00000611481 MTMR14Q8NCE2 650 aa8.5□□□□□ -1.05
LINC00540-201ENST00000611481 FHDC1Q9C0D6 1143 aaPredicted RBP8.5□□□□□ -1.05
LINC00540-201ENST00000611481 EFHC2Q5JST6 749 aa8.49□□□□□ -1.05
LINC00540-201ENST00000611481 GOLGA6L1Q8N7Z2 621 aa8.49□□□□□ -1.05
LINC00540-201ENST00000611481 EDARADDQ8WWZ3 215 aa8.49□□□□□ -1.05
LINC00540-201ENST00000611481 CCDC85AQ96PX6 553 aaPredicted RBP8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms