RNA–Protein interactions for RNA: ENST00000592106.5

VMP1-214, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-214ENST00000592106 NKX1-1Q15270 411 aaPredicted RBP13.89□□□□□ -0.19
VMP1-214ENST00000592106 IFNL2Q8IZJ0 200 aa13.89□□□□□ -0.19
VMP1-214ENST00000592106 TMOD3Q9NYL9 352 aa13.89□□□□□ -0.19
VMP1-214ENST00000592106 TAF1LQ8IZX4 1826 aa13.89□□□□□ -0.19
VMP1-214ENST00000592106 C4BP0C0L5 1744 aa13.88□□□□□ -0.19
VMP1-214ENST00000592106 EIF4A2Q14240 407 aaKnown RBP13.88□□□□□ -0.19
VMP1-214ENST00000592106 PANK3Q9H999 370 aa13.88□□□□□ -0.19
VMP1-214ENST00000592106 CHD4Q14839 1912 aa13.88□□□□□ -0.19
VMP1-214ENST00000592106 PHKG2P15735 406 aa13.87□□□□□ -0.19
VMP1-214ENST00000592106 COL23A1Q86Y22 540 aaPredicted RBP13.87□□□□□ -0.19
VMP1-214ENST00000592106 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
VMP1-214ENST00000592106 PIGBQ92521 554 aa13.87□□□□□ -0.19
VMP1-214ENST00000592106 IGSF1Q8N6C5 1336 aa13.87□□□□□ -0.19
VMP1-214ENST00000592106 HSP90AB1P08238 724 aaKnown RBP13.86□□□□□ -0.19
VMP1-214ENST00000592106 MORC1Q86VD1 984 aa13.86□□□□□ -0.19
VMP1-214ENST00000592106 KNSTRNQ9Y448 316 aa13.86□□□□□ -0.19
VMP1-214ENST00000592106 LOC102724428A0A0B4J2F2 783 aa13.85□□□□□ -0.19
VMP1-214ENST00000592106 SIK1P57059 783 aa13.85□□□□□ -0.19
VMP1-214ENST00000592106 MSL1Q68DK7 614 aa13.85□□□□□ -0.19
VMP1-214ENST00000592106 SSFA2P28290 1259 aa13.84□□□□□ -0.19
VMP1-214ENST00000592106 PLEKHO1Q53GL0 409 aaPredicted RBP13.84□□□□□ -0.19
VMP1-214ENST00000592106 PHF14O94880 888 aa13.83□□□□□ -0.2
VMP1-214ENST00000592106 AMOTQ4VCS5 1084 aa13.83□□□□□ -0.2
VMP1-214ENST00000592106 ZNF784Q8NCA9 323 aaPredicted RBP13.83□□□□□ -0.2
VMP1-214ENST00000592106 UBR3Q6ZT12 1888 aa13.82□□□□□ -0.2
VMP1-214ENST00000592106 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.82□□□□□ -0.2
VMP1-214ENST00000592106 ERVV-2B6SEH9 535 aa13.82□□□□□ -0.2
VMP1-214ENST00000592106 GRIN3BO60391 1043 aa13.82□□□□□ -0.2
VMP1-214ENST00000592106 C1orf141Q5JVX7 400 aa13.82□□□□□ -0.2
VMP1-214ENST00000592106 NLGN2Q8NFZ4 835 aa13.82□□□□□ -0.2
VMP1-214ENST00000592106 DCAF5Q96JK2 942 aa13.82□□□□□ -0.2
VMP1-214ENST00000592106 SPDYE4A6NLX3 237 aa13.81□□□□□ -0.2
VMP1-214ENST00000592106 ATP6V1AP38606 617 aa13.81□□□□□ -0.2
VMP1-214ENST00000592106 ZNF530Q6P9A1 599 aaPredicted RBP13.81□□□□□ -0.2
VMP1-214ENST00000592106 CD2APQ9Y5K6 639 aa13.81□□□□□ -0.2
VMP1-214ENST00000592106 GNPATO15228 680 aa13.8□□□□□ -0.2
VMP1-214ENST00000592106 LINC00116Q8NCU8 138 aa13.8□□□□□ -0.2
VMP1-214ENST00000592106 ASAP1Q9ULH1 1129 aa13.8□□□□□ -0.2
VMP1-214ENST00000592106 CABP4P57796 275 aa13.79□□□□□ -0.2
VMP1-214ENST00000592106 ATG3Q9NT62 314 aa13.79□□□□□ -0.2
VMP1-214ENST00000592106 ZNF831Q5JPB2 1677 aa13.79□□□□□ -0.2
VMP1-214ENST00000592106 KDRP35968 1356 aa13.78□□□□□ -0.2
VMP1-214ENST00000592106 KDM6AO15550 1401 aaPredicted RBP13.77□□□□□ -0.21
VMP1-214ENST00000592106 ITPK1Q13572 414 aa13.77□□□□□ -0.21
VMP1-214ENST00000592106 KIF7Q2M1P5 1343 aa13.77□□□□□ -0.21
VMP1-214ENST00000592106 SULT6B1Q6IMI4 303 aa13.77□□□□□ -0.21
VMP1-214ENST00000592106 RTCBQ9Y3I0 505 aaKnown RBP13.77□□□□□ -0.21
VMP1-214ENST00000592106 MTHFSP49914 203 aa13.76□□□□□ -0.21
VMP1-214ENST00000592106 CNTNAP4Q9C0A0 1308 aa13.75□□□□□ -0.21
VMP1-214ENST00000592106 YBX3P16989 372 aaKnown RBP eCLIP13.75□□□□□ -0.21
VMP1-214ENST00000592106 AMER1Q5JTC6 1135 aaPredicted RBP13.75□□□□□ -0.21
VMP1-214ENST00000592106 AEBP1Q8IUX7 1158 aa13.75□□□□□ -0.21
VMP1-214ENST00000592106 SSUH2Q9Y2M2 353 aa13.75□□□□□ -0.21
VMP1-214ENST00000592106 GIGYF1O75420 1035 aaPredicted RBP13.74□□□□□ -0.21
VMP1-214ENST00000592106 IL13P35225 146 aa13.74□□□□□ -0.21
VMP1-214ENST00000592106 FKBP8Q14318 412 aa13.74□□□□□ -0.21
VMP1-214ENST00000592106 TRAPPC3LQ5T215 181 aa13.74□□□□□ -0.21
VMP1-214ENST00000592106 RC3H1Q5TC82 1133 aaKnown RBP13.74□□□□□ -0.21
VMP1-214ENST00000592106 AMIGO3Q86WK7 504 aa13.74□□□□□ -0.21
VMP1-214ENST00000592106 COL5A3P25940 1745 aaPredicted RBP13.73□□□□□ -0.21
VMP1-214ENST00000592106 AKAP4Q5JQC9 854 aa13.73□□□□□ -0.21
VMP1-214ENST00000592106 SENP3-EIF4A1A0A087X0R7 540 aa13.72□□□□□ -0.21
VMP1-214ENST00000592106 RFC4P35249 363 aa13.72□□□□□ -0.21
VMP1-214ENST00000592106 NLGN1Q8N2Q7 840 aa13.72□□□□□ -0.21
VMP1-214ENST00000592106 RPS6KA4O75676 772 aa13.71□□□□□ -0.21
VMP1-214ENST00000592106 MMP10P09238 476 aa13.71□□□□□ -0.21
VMP1-214ENST00000592106 C1QTNF8P60827 252 aa13.71□□□□□ -0.21
VMP1-214ENST00000592106 SMIM5Q71RC9 77 aa13.71□□□□□ -0.21
VMP1-214ENST00000592106 CCDC87Q9NVE4 849 aa13.71□□□□□ -0.21
VMP1-214ENST00000592106 CICQ96RK0 1608 aaPredicted RBP13.71□□□□□ -0.22
VMP1-214ENST00000592106 SCN11AQ9UI33 1791 aa13.71□□□□□ -0.22
VMP1-214ENST00000592106 DIAPH1O60610 1272 aaKnown RBP13.7□□□□□ -0.22
VMP1-214ENST00000592106 PTCD1O75127 700 aaKnown RBP13.7□□□□□ -0.22
VMP1-214ENST00000592106 NFATC2IPQ8NCF5 419 aa13.7□□□□□ -0.22
VMP1-214ENST00000592106 NPC1L1Q9UHC9 1359 aa13.7□□□□□ -0.22
VMP1-214ENST00000592106 MRC1P22897 1456 aa13.69□□□□□ -0.22
VMP1-214ENST00000592106 CC2D1BQ5T0F9 858 aaKnown RBP13.69□□□□□ -0.22
VMP1-214ENST00000592106 SLC4A9Q96Q91 983 aa13.69□□□□□ -0.22
VMP1-214ENST00000592106 PARP3Q9Y6F1 533 aa13.69□□□□□ -0.22
VMP1-214ENST00000592106 C4AP0C0L4 1744 aa13.68□□□□□ -0.22
VMP1-214ENST00000592106 ATP10DQ9P241 1426 aa13.68□□□□□ -0.22
VMP1-214ENST00000592106 HMOX1P09601 288 aa13.68□□□□□ -0.22
VMP1-214ENST00000592106 TGFB2P61812 414 aa13.68□□□□□ -0.22
VMP1-214ENST00000592106 ARHGEF1Q92888 912 aaKnown RBP13.68□□□□□ -0.22
VMP1-214ENST00000592106 KIF13BQ9NQT8 1826 aa13.68□□□□□ -0.22
VMP1-214ENST00000592106 TJP1Q07157 1748 aa13.67□□□□□ -0.22
VMP1-214ENST00000592106 C10orf71Q711Q0 1435 aa13.67□□□□□ -0.22
VMP1-214ENST00000592106 CRKLP46109 303 aaKnown RBP13.67□□□□□ -0.22
VMP1-214ENST00000592106 SLC52A2Q9HAB3 445 aa13.67□□□□□ -0.22
VMP1-214ENST00000592106 PXDNLA1KZ92 1463 aa13.67□□□□□ -0.22
VMP1-214ENST00000592106 PER1O15534 1290 aaPredicted RBP13.66□□□□□ -0.22
VMP1-214ENST00000592106 RNMTO43148 476 aaKnown RBP13.66□□□□□ -0.22
VMP1-214ENST00000592106 GYS1P13807 737 aa13.66□□□□□ -0.22
VMP1-214ENST00000592106 USP42Q9H9J4 1324 aaKnown RBP13.65□□□□□ -0.22
VMP1-214ENST00000592106 GPBP1L1Q9HC44 474 aaPredicted RBP13.65□□□□□ -0.22
VMP1-214ENST00000592106 WWC3Q9ULE0 1092 aa13.65□□□□□ -0.22
VMP1-214ENST00000592106 ADCY9O60503 1353 aa13.65□□□□□ -0.22
VMP1-214ENST00000592106 U2SURPO15042 1029 aaKnown RBP13.64□□□□□ -0.23
VMP1-214ENST00000592106 GAS2L2Q8NHY3 880 aa13.64□□□□□ -0.23
VMP1-214ENST00000592106 CFAP53Q96M91 514 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms