RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 GNPATO15228 680 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 ATP6V1AP38606 617 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 PANK3Q9H999 370 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 SPG7Q9UQ90 795 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 KIF20BQ96Q89 1820 aa13.64□□□□□ -0.23
SS18-210ENST00000578700 KIF3CO14782 793 aa13.63□□□□□ -0.23
SS18-210ENST00000578700 SSFA2P28290 1259 aa13.63□□□□□ -0.23
SS18-210ENST00000578700 CNGB1Q14028 1251 aaPredicted RBP13.63□□□□□ -0.23
SS18-210ENST00000578700 MRS2Q9HD23 443 aa13.63□□□□□ -0.23
SS18-210ENST00000578700 TMOD3Q9NYL9 352 aa13.63□□□□□ -0.23
SS18-210ENST00000578700 ASAP1Q9ULH1 1129 aa13.63□□□□□ -0.23
SS18-210ENST00000578700 PKD1L3Q7Z443 1732 aa13.63□□□□□ -0.23
SS18-210ENST00000578700 MAP2P11137 1827 aaKnown RBP13.62□□□□□ -0.23
SS18-210ENST00000578700 FLT4P35916 1363 aa13.62□□□□□ -0.23
SS18-210ENST00000578700 MMP10P09238 476 aa13.62□□□□□ -0.23
SS18-210ENST00000578700 ARHGAP27Q6ZUM4 889 aa13.62□□□□□ -0.23
SS18-210ENST00000578700 BCS1LQ9Y276 419 aa13.62□□□□□ -0.23
SS18-210ENST00000578700 A0A0G2JLW4 131 aa13.61□□□□□ -0.23
SS18-210ENST00000578700 ITPK1Q13572 414 aa13.61□□□□□ -0.23
SS18-210ENST00000578700 NSD3Q9BZ95 1437 aa13.61□□□□□ -0.23
SS18-210ENST00000578700 RBM42Q9BTD8 480 aaKnown RBP13.6□□□□□ -0.23
SS18-210ENST00000578700 MYBBP1AQ9BQG0 1328 aaKnown RBP13.6□□□□□ -0.23
SS18-210ENST00000578700 KIF24Q5T7B8 1368 aa13.59□□□□□ -0.23
SS18-210ENST00000578700 APLP1P51693 650 aa13.59□□□□□ -0.23
SS18-210ENST00000578700 NKX1-1Q15270 411 aaPredicted RBP13.59□□□□□ -0.23
SS18-210ENST00000578700 TRAPPC3LQ5T215 181 aa13.59□□□□□ -0.23
SS18-210ENST00000578700 EYA1Q99502 592 aa13.59□□□□□ -0.23
SS18-210ENST00000578700 PCNTO95613 3336 aa13.59□□□□□ -0.23
SS18-210ENST00000578700 KIF13BQ9NQT8 1826 aa13.59□□□□□ -0.23
SS18-210ENST00000578700 CICQ96RK0 1608 aaPredicted RBP13.58□□□□□ -0.24
SS18-210ENST00000578700 FCHSD2O94868 740 aa13.58□□□□□ -0.24
SS18-210ENST00000578700 IFNL2Q8IZJ0 200 aa13.58□□□□□ -0.24
SS18-210ENST00000578700 CARD14Q9BXL6 1004 aa13.58□□□□□ -0.24
SS18-210ENST00000578700 ATG3Q9NT62 314 aa13.58□□□□□ -0.24
SS18-210ENST00000578700 RTCBQ9Y3I0 505 aaKnown RBP13.58□□□□□ -0.24
SS18-210ENST00000578700 PER1O15534 1290 aaPredicted RBP13.57□□□□□ -0.24
SS18-210ENST00000578700 PHKG2P15735 406 aa13.57□□□□□ -0.24
SS18-210ENST00000578700 ANKRD26Q9UPS8 1709 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 TOMM70O94826 608 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 DPEP1P16444 411 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 TNNT2P45379 298 aaPredicted RBP13.56□□□□□ -0.24
SS18-210ENST00000578700 TGFB2P61812 414 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 NLGN1Q8N2Q7 840 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 ARHGEF1Q92888 912 aaKnown RBP13.56□□□□□ -0.24
SS18-210ENST00000578700 NMRK2Q9NPI5 230 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 KIAA1551Q9HCM1 1747 aa13.56□□□□□ -0.24
SS18-210ENST00000578700 RFC4P35249 363 aa13.55□□□□□ -0.24
SS18-210ENST00000578700 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
SS18-210ENST00000578700 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
SS18-210ENST00000578700 CCDC87Q9NVE4 849 aa13.55□□□□□ -0.24
SS18-210ENST00000578700 PARP3Q9Y6F1 533 aa13.55□□□□□ -0.24
SS18-210ENST00000578700 N4BP2Q86UW6 1770 aaPredicted RBP13.55□□□□□ -0.24
SS18-210ENST00000578700 NCAPD2Q15021 1401 aa13.55□□□□□ -0.24
SS18-210ENST00000578700 HTRA3P83110 453 aa13.54□□□□□ -0.24
SS18-210ENST00000578700 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.54□□□□□ -0.247e-7■■■□□ 14.8
SS18-210ENST00000578700 NPC1L1Q9UHC9 1359 aa13.54□□□□□ -0.24
SS18-210ENST00000578700 BRCA1P38398 1863 aaKnown RBP13.53□□□□□ -0.24
SS18-210ENST00000578700 C9orf131Q5VYM1 1079 aa13.53□□□□□ -0.24
SS18-210ENST00000578700 FAM9BQ8IZU0 186 aa13.53□□□□□ -0.24
SS18-210ENST00000578700 DNAJC5GQ8N7S2 189 aa13.53□□□□□ -0.24
SS18-210ENST00000578700 ZNF831Q5JPB2 1677 aa13.53□□□□□ -0.24
SS18-210ENST00000578700 GYS1P13807 737 aa13.52□□□□□ -0.25
SS18-210ENST00000578700 SLC4A9Q96Q91 983 aa13.52□□□□□ -0.25
SS18-210ENST00000578700 POLKQ9UBT6 870 aa13.52□□□□□ -0.25
SS18-210ENST00000578700 PXDNLA1KZ92 1463 aa13.52□□□□□ -0.25
SS18-210ENST00000578700 ARFGEF1Q9Y6D6 1849 aa13.51□□□□□ -0.25
SS18-210ENST00000578700 PTCD1O75127 700 aaKnown RBP13.51□□□□□ -0.25
SS18-210ENST00000578700 RPS6KA4O75676 772 aa13.51□□□□□ -0.25
SS18-210ENST00000578700 HNRNPUQ00839 825 aaKnown RBP eCLIP13.51□□□□□ -0.25
SS18-210ENST00000578700 EIF4A2Q14240 407 aaKnown RBP13.51□□□□□ -0.25
SS18-210ENST00000578700 COL5A3P25940 1745 aaPredicted RBP13.5□□□□□ -0.25
SS18-210ENST00000578700 CABP4P57796 275 aa13.5□□□□□ -0.25
SS18-210ENST00000578700 RC3H1Q5TC82 1133 aaKnown RBP13.5□□□□□ -0.25
SS18-210ENST00000578700 PIM2Q9P1W9 311 aa13.5□□□□□ -0.25
SS18-210ENST00000578700 ERVV-2B6SEH9 535 aa13.49□□□□□ -0.25
SS18-210ENST00000578700 CAPN15O75808 1086 aa13.49□□□□□ -0.25
SS18-210ENST00000578700 PLEKHO1Q53GL0 409 aaPredicted RBP13.49□□□□□ -0.25
SS18-210ENST00000578700 AMER1Q5JTC6 1135 aaPredicted RBP13.49□□□□□ -0.25
SS18-210ENST00000578700 RRAGCQ9HB90 399 aa13.49□□□□□ -0.25
SS18-210ENST00000578700 RNF181Q9P0P0 153 aa13.49□□□□□ -0.25
SS18-210ENST00000578700 SRP68Q9UHB9 627 aaKnown RBP13.49□□□□□ -0.25
SS18-210ENST00000578700 WDR90Q96KV7 1748 aa13.48□□□□□ -0.25
SS18-210ENST00000578700 HSP90AB1P08238 724 aaKnown RBP13.48□□□□□ -0.25
SS18-210ENST00000578700 KCNA3P22001 575 aa13.48□□□□□ -0.25
SS18-210ENST00000578700 CCDC184Q52MB2 194 aa13.48□□□□□ -0.25
SS18-210ENST00000578700 DALRD3Q5D0E6 543 aaKnown RBP13.48□□□□□ -0.25
SS18-210ENST00000578700 ZNF530Q6P9A1 599 aaPredicted RBP13.48□□□□□ -0.25
SS18-210ENST00000578700 RBM46Q8TBY0 533 aaKnown RBP13.48□□□□□ -0.25
SS18-210ENST00000578700 DCAF5Q96JK2 942 aa13.48□□□□□ -0.25
SS18-210ENST00000578700 MYH14Q7Z406 1995 aaKnown RBP13.48□□□□□ -0.25
SS18-210ENST00000578700 C4AP0C0L4 1744 aa13.47□□□□□ -0.25
SS18-210ENST00000578700 CHRNA5P30532 468 aa13.47□□□□□ -0.25
SS18-210ENST00000578700 MTHFSP49914 203 aa13.47□□□□□ -0.25
SS18-210ENST00000578700 FKBP8Q14318 412 aa13.47□□□□□ -0.25
SS18-210ENST00000578700 C10orf71Q711Q0 1435 aa13.47□□□□□ -0.25
SS18-210ENST00000578700 PLEKHG2Q9H7P9 1386 aa13.46□□□□□ -0.25
SS18-210ENST00000578700 KDM2BQ8NHM5 1336 aa13.46□□□□□ -0.25
SS18-210ENST00000578700 CNTNAP4Q9C0A0 1308 aa13.46□□□□□ -0.25
SS18-210ENST00000578700 CRKLP46109 303 aaKnown RBP13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms