RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 MRS2Q9HD23 443 aa13.63□□□□□ -0.23
SS18-207ENST00000577636 TMOD3Q9NYL9 352 aa13.63□□□□□ -0.23
SS18-207ENST00000577636 ASAP1Q9ULH1 1129 aa13.63□□□□□ -0.23
SS18-207ENST00000577636 ADCY9O60503 1353 aa13.62□□□□□ -0.23
SS18-207ENST00000577636 FLT4P35916 1363 aa13.62□□□□□ -0.23
SS18-207ENST00000577636 MMP10P09238 476 aa13.62□□□□□ -0.23
SS18-207ENST00000577636 ARHGAP27Q6ZUM4 889 aa13.62□□□□□ -0.23
SS18-207ENST00000577636 BCS1LQ9Y276 419 aa13.62□□□□□ -0.23
SS18-207ENST00000577636 C5P01031 1676 aa13.62□□□□□ -0.23
SS18-207ENST00000577636 A0A0G2JLW4 131 aa13.61□□□□□ -0.23
SS18-207ENST00000577636 ITPK1Q13572 414 aa13.61□□□□□ -0.23
SS18-207ENST00000577636 RBM42Q9BTD8 480 aaKnown RBP13.6□□□□□ -0.23
SS18-207ENST00000577636 MYBBP1AQ9BQG0 1328 aaKnown RBP13.6□□□□□ -0.23
SS18-207ENST00000577636 C4BP0C0L5 1744 aa13.59□□□□□ -0.23
SS18-207ENST00000577636 NSD3Q9BZ95 1437 aa13.59□□□□□ -0.23
SS18-207ENST00000577636 APLP1P51693 650 aa13.59□□□□□ -0.23
SS18-207ENST00000577636 NKX1-1Q15270 411 aaPredicted RBP13.59□□□□□ -0.23
SS18-207ENST00000577636 TRAPPC3LQ5T215 181 aa13.59□□□□□ -0.23
SS18-207ENST00000577636 EYA1Q99502 592 aa13.59□□□□□ -0.23
SS18-207ENST00000577636 FCHSD2O94868 740 aa13.58□□□□□ -0.24
SS18-207ENST00000577636 IFNL2Q8IZJ0 200 aa13.58□□□□□ -0.24
SS18-207ENST00000577636 CARD14Q9BXL6 1004 aa13.58□□□□□ -0.24
SS18-207ENST00000577636 ATG3Q9NT62 314 aa13.58□□□□□ -0.24
SS18-207ENST00000577636 RTCBQ9Y3I0 505 aaKnown RBP13.58□□□□□ -0.24
SS18-207ENST00000577636 PER1O15534 1290 aaPredicted RBP13.57□□□□□ -0.24
SS18-207ENST00000577636 PHKG2P15735 406 aa13.57□□□□□ -0.24
SS18-207ENST00000577636 TAF1LQ8IZX4 1826 aa13.57□□□□□ -0.24
SS18-207ENST00000577636 TOMM70O94826 608 aa13.56□□□□□ -0.24
SS18-207ENST00000577636 DPEP1P16444 411 aa13.56□□□□□ -0.24
SS18-207ENST00000577636 TNNT2P45379 298 aaPredicted RBP13.56□□□□□ -0.24
SS18-207ENST00000577636 TGFB2P61812 414 aa13.56□□□□□ -0.24
SS18-207ENST00000577636 NLGN1Q8N2Q7 840 aa13.56□□□□□ -0.24
SS18-207ENST00000577636 ARHGEF1Q92888 912 aaKnown RBP13.56□□□□□ -0.24
SS18-207ENST00000577636 NMRK2Q9NPI5 230 aa13.56□□□□□ -0.24
SS18-207ENST00000577636 RFC4P35249 363 aa13.55□□□□□ -0.24
SS18-207ENST00000577636 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
SS18-207ENST00000577636 C16orf71Q8IYS4 520 aaPredicted RBP13.55□□□□□ -0.24
SS18-207ENST00000577636 CCDC87Q9NVE4 849 aa13.55□□□□□ -0.24
SS18-207ENST00000577636 PARP3Q9Y6F1 533 aa13.55□□□□□ -0.24
SS18-207ENST00000577636 KIF24Q5T7B8 1368 aa13.55□□□□□ -0.24
SS18-207ENST00000577636 ITGB4P16144 1822 aa13.55□□□□□ -0.24
SS18-207ENST00000577636 HTRA3P83110 453 aa13.54□□□□□ -0.24
SS18-207ENST00000577636 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.54□□□□□ -0.243e-7■■□□□ 13.5
SS18-207ENST00000577636 NPC1L1Q9UHC9 1359 aa13.54□□□□□ -0.24
SS18-207ENST00000577636 TOGARAM1Q9Y4F4 1720 aa13.53□□□□□ -0.24
SS18-207ENST00000577636 UBR3Q6ZT12 1888 aa13.53□□□□□ -0.24
SS18-207ENST00000577636 C9orf131Q5VYM1 1079 aa13.53□□□□□ -0.24
SS18-207ENST00000577636 FAM9BQ8IZU0 186 aa13.53□□□□□ -0.24
SS18-207ENST00000577636 DNAJC5GQ8N7S2 189 aa13.53□□□□□ -0.24
SS18-207ENST00000577636 GYS1P13807 737 aa13.52□□□□□ -0.25
SS18-207ENST00000577636 SLC4A9Q96Q91 983 aa13.52□□□□□ -0.25
SS18-207ENST00000577636 POLKQ9UBT6 870 aa13.52□□□□□ -0.25
SS18-207ENST00000577636 PXDNLA1KZ92 1463 aa13.52□□□□□ -0.25
SS18-207ENST00000577636 PTCD1O75127 700 aaKnown RBP13.51□□□□□ -0.25
SS18-207ENST00000577636 RPS6KA4O75676 772 aa13.51□□□□□ -0.25
SS18-207ENST00000577636 HNRNPUQ00839 825 aaKnown RBP eCLIP13.51□□□□□ -0.25
SS18-207ENST00000577636 EIF4A2Q14240 407 aaKnown RBP13.51□□□□□ -0.25
SS18-207ENST00000577636 CABP4P57796 275 aa13.5□□□□□ -0.25
SS18-207ENST00000577636 RC3H1Q5TC82 1133 aaKnown RBP13.5□□□□□ -0.25
SS18-207ENST00000577636 PIM2Q9P1W9 311 aa13.5□□□□□ -0.25
SS18-207ENST00000577636 CICQ96RK0 1608 aaPredicted RBP13.5□□□□□ -0.25
SS18-207ENST00000577636 ERVV-2B6SEH9 535 aa13.49□□□□□ -0.25
SS18-207ENST00000577636 CAPN15O75808 1086 aa13.49□□□□□ -0.25
SS18-207ENST00000577636 PLEKHO1Q53GL0 409 aaPredicted RBP13.49□□□□□ -0.25
SS18-207ENST00000577636 AMER1Q5JTC6 1135 aaPredicted RBP13.49□□□□□ -0.25
SS18-207ENST00000577636 RRAGCQ9HB90 399 aa13.49□□□□□ -0.25
SS18-207ENST00000577636 RNF181Q9P0P0 153 aa13.49□□□□□ -0.25
SS18-207ENST00000577636 SRP68Q9UHB9 627 aaKnown RBP13.49□□□□□ -0.25
SS18-207ENST00000577636 MAP2P11137 1827 aaKnown RBP13.48□□□□□ -0.25
SS18-207ENST00000577636 KIF20BQ96Q89 1820 aa13.48□□□□□ -0.25
SS18-207ENST00000577636 N4BP2Q86UW6 1770 aaPredicted RBP13.48□□□□□ -0.25
SS18-207ENST00000577636 HSP90AB1P08238 724 aaKnown RBP13.48□□□□□ -0.25
SS18-207ENST00000577636 KCNA3P22001 575 aa13.48□□□□□ -0.25
SS18-207ENST00000577636 CCDC184Q52MB2 194 aa13.48□□□□□ -0.25
SS18-207ENST00000577636 DALRD3Q5D0E6 543 aaKnown RBP13.48□□□□□ -0.25
SS18-207ENST00000577636 ZNF530Q6P9A1 599 aaPredicted RBP13.48□□□□□ -0.25
SS18-207ENST00000577636 RBM46Q8TBY0 533 aaKnown RBP13.48□□□□□ -0.25
SS18-207ENST00000577636 DCAF5Q96JK2 942 aa13.48□□□□□ -0.25
SS18-207ENST00000577636 PKD1L3Q7Z443 1732 aa13.47□□□□□ -0.25
SS18-207ENST00000577636 CHRNA5P30532 468 aa13.47□□□□□ -0.25
SS18-207ENST00000577636 MTHFSP49914 203 aa13.47□□□□□ -0.25
SS18-207ENST00000577636 FKBP8Q14318 412 aa13.47□□□□□ -0.25
SS18-207ENST00000577636 NCAPD2Q15021 1401 aa13.47□□□□□ -0.25
SS18-207ENST00000577636 C10orf71Q711Q0 1435 aa13.47□□□□□ -0.25
SS18-207ENST00000577636 KDM2BQ8NHM5 1336 aa13.46□□□□□ -0.25
SS18-207ENST00000577636 CNTNAP4Q9C0A0 1308 aa13.46□□□□□ -0.25
SS18-207ENST00000577636 CRKLP46109 303 aaKnown RBP13.46□□□□□ -0.25
SS18-207ENST00000577636 C1orf141Q5JVX7 400 aa13.46□□□□□ -0.25
SS18-207ENST00000577636 COL13A1Q5TAT6 717 aaPredicted RBP13.46□□□□□ -0.25
SS18-207ENST00000577636 MORC1Q86VD1 984 aa13.46□□□□□ -0.25
SS18-207ENST00000577636 KLRG1Q96E93 195 aa13.46□□□□□ -0.25
SS18-207ENST00000577636 NFATC2IPQ8NCF5 419 aa13.45□□□□□ -0.26
SS18-207ENST00000577636 PNISRQ8TF01 805 aaKnown RBP13.45□□□□□ -0.26
SS18-207ENST00000577636 KDRP35968 1356 aa13.45□□□□□ -0.26
SS18-207ENST00000577636 PPP2R1AP30153 589 aa13.44□□□□□ -0.26
SS18-207ENST00000577636 FSTL1Q12841 308 aa13.44□□□□□ -0.26
SS18-207ENST00000577636 KCPQ6ZWJ8 1503 aa13.44□□□□□ -0.26
SS18-207ENST00000577636 DDR1Q08345 913 aa13.43□□□□□ -0.26
SS18-207ENST00000577636 WDR43Q15061 677 aaKnown RBP eCLIP13.43□□□□□ -0.26
SS18-207ENST00000577636 AMOTQ4VCS5 1084 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms