RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 TOM1L2Q6ZVM7 507 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 FAM107BQ9H098 131 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 TOP1P11387 765 aaKnown RBP15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 FERMT3Q86UX7 667 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 ABCC11Q96J66 1382 aa15.39■□□□□ 0.05
CSPG4P11-201ENST00000560634 ARHGAP5Q13017 1502 aa15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 MCM5P33992 734 aa15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 STRN4Q9NRL3 753 aa15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 IDH1O75874 414 aaKnown RBP15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 PAFAH1B1P43034 410 aa15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 IGHMBP2P38935 993 aaKnown RBP15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 URI1O94763 535 aaPredicted RBP15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 KIF20AO95235 890 aa15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 DDX19AQ9NUU7 478 aaKnown RBP15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 EXOC6BQ9Y2D4 811 aa15.38■□□□□ 0.05
CSPG4P11-201ENST00000560634 CGNQ9P2M7 1197 aaKnown RBP15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 GSDMDP57764 484 aa15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 USO1O60763 962 aaKnown RBP15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 CAVIN2O95810 425 aa15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 TRIM21P19474 475 aaKnown RBP15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 MAP2K1Q02750 393 aaPredicted RBP15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 DYDC1Q8WWB3 177 aa15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 TSG101Q99816 390 aa15.37■□□□□ 0.05
CSPG4P11-201ENST00000560634 POTEB2H3BUK9 544 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 RAB34Q9BZG1 259 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 PODXL2Q9NZ53 605 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 C8orf76Q96K31 380 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 DNAI2Q9GZS0 605 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 CALCOCO1Q9P1Z2 691 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 ERICH4A6NGS2 130 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 LARP1Q6PKG0 1096 aaKnown RBP15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 DDX54Q8TDD1 881 aaKnown RBP15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 CASQ1P31415 396 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 CAMK4Q16566 473 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 SYNJ2O15056 1496 aa15.36■□□□□ 0.05
CSPG4P11-201ENST00000560634 GNAT3A8MTJ3 354 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 PRPF40BQ6NWY9 871 aaKnown RBP15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 CACNA2D4Q7Z3S7 1137 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 LUZP1Q86V48 1076 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 LIMCH1Q9UPQ0 1083 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 POLA1P09884 1462 aaPredicted RBP15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 MICALCLQ6ZW33 695 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 NUTM1Q86Y26 1132 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 GOLGA6L9A6NEM1 432 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 NEBLO76041 1014 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 GIMAP7Q8NHV1 300 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 CLIP2Q9UDT6 1046 aa15.35■□□□□ 0.05
CSPG4P11-201ENST00000560634 C9orf84Q5VXU9 1444 aa15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 TNIP1Q15025 636 aa15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 ZSCAN29Q8IWY8 852 aaPredicted RBP15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 SSR1P43307 286 aaKnown RBP15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 DUSP27Q5VZP5 1158 aa15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 SEC63Q9UGP8 760 aaKnown RBP15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 SMC1AQ14683 1233 aaKnown RBP15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 CTCFLQ8NI51 663 aaPredicted RBP15.34■□□□□ 0.05
CSPG4P11-201ENST00000560634 MPHOSPH10O00566 681 aaKnown RBP15.33■□□□□ 0.05
CSPG4P11-201ENST00000560634 CCDC61Q9Y6R9 512 aa15.33■□□□□ 0.05
CSPG4P11-201ENST00000560634 GRIN2BQ13224 1484 aa15.33■□□□□ 0.05
CSPG4P11-201ENST00000560634 YEATS4O95619 227 aa15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 STARD3NLO95772 234 aa15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 RBM5P52756 815 aaKnown RBP eCLIP15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 METTL24Q5JXM2 366 aa15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 IFIT1P09914 478 aaKnown RBP15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 TNNT1P13805 278 aa15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 RARSP54136 660 aaKnown RBP15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 NAA15Q9BXJ9 866 aaKnown RBP15.33■□□□□ 0.04
CSPG4P11-201ENST00000560634 PRDM11Q9NQV5 511 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 TMOD2Q9NZR1 351 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 DHX29Q7Z478 1369 aaKnown RBP15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 GCOM1H8Y6P7 765 aaPredicted RBP15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 MYZAPP0CAP1 466 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 IFFO1Q0D2I5 559 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 NAPBQ9H115 298 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 HMGXB3Q12766 1538 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 GOLGA6L10A0A0M3HER8 536 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 USP5P45974 858 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 KCNH5Q8NCM2 988 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 RNF41Q9H4P4 317 aaPredicted RBP15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 ABCF2Q9UG63 623 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 KLHL10Q6JEL2 608 aa15.32■□□□□ 0.04
CSPG4P11-201ENST00000560634 UVSSAQ2YD98 709 aa15.31■□□□□ 0.04
CSPG4P11-201ENST00000560634 IQCA1Q86XH1 822 aa15.31■□□□□ 0.04
CSPG4P11-201ENST00000560634 SSH1Q8WYL5 1049 aa15.31■□□□□ 0.04
CSPG4P11-201ENST00000560634 PYM1Q9BRP8 204 aaKnown RBP15.31■□□□□ 0.04
CSPG4P11-201ENST00000560634 GSTTP1A0A1W2PQM5 241 aa15.31■□□□□ 0.04
CSPG4P11-201ENST00000560634 TAOK3Q9H2K8 898 aa15.31■□□□□ 0.04
CSPG4P11-201ENST00000560634 MATR3P43243 847 aaKnown RBP eCLIP15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 TMEM266Q2M3C6 531 aa15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 MAP3K12Q12852 859 aa15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 RRS1Q15050 365 aaKnown RBP15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 CNNM3Q8NE01 707 aa15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 CC2D2AQ9P2K1 1620 aa15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 NESP48681 1621 aa15.3■□□□□ 0.04
CSPG4P11-201ENST00000560634 CAVIN4Q5BKX8 364 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 SMARCC1Q92922 1105 aaPredicted RBP15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 CCDC113Q9H0I3 377 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 STAMBPO95630 424 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 SPECC1Q5M775 1068 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 HOOK3Q86VS8 718 aa15.29■□□□□ 0.04
CSPG4P11-201ENST00000560634 TNPO1Q92973 898 aaKnown RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms