RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 TMOD3Q9NYL9 352 aa15.87■□□□□ 0.13
LDLR-212ENST00000560467 PKD1L3Q7Z443 1732 aa15.87■□□□□ 0.13
LDLR-212ENST00000560467 GNPATO15228 680 aa15.86■□□□□ 0.13
LDLR-212ENST00000560467 CNGB1Q14028 1251 aaPredicted RBP15.86■□□□□ 0.13
LDLR-212ENST00000560467 RALBP1Q15311 655 aa15.86■□□□□ 0.13
LDLR-212ENST00000560467 MIER1Q8N108 512 aa15.86■□□□□ 0.13
LDLR-212ENST00000560467 TAF1LQ8IZX4 1826 aa15.85■□□□□ 0.13
LDLR-212ENST00000560467 PHKG2P15735 406 aa15.85■□□□□ 0.13
LDLR-212ENST00000560467 ATP6V1AP38606 617 aa15.84■□□□□ 0.13
LDLR-212ENST00000560467 POLKQ9UBT6 870 aa15.84■□□□□ 0.13
LDLR-212ENST00000560467 PER1O15534 1290 aaPredicted RBP15.83■□□□□ 0.12
LDLR-212ENST00000560467 TNNT2P45379 298 aaPredicted RBP15.83■□□□□ 0.12
LDLR-212ENST00000560467 ATG3Q9NT62 314 aa15.83■□□□□ 0.12
LDLR-212ENST00000560467 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.83■□□□□ 0.12
LDLR-212ENST00000560467 UBR3Q6ZT12 1888 aa15.82■□□□□ 0.12
LDLR-212ENST00000560467 MMP10P09238 476 aa15.82■□□□□ 0.12
LDLR-212ENST00000560467 EIF4A2Q14240 407 aaKnown RBP15.82■□□□□ 0.12
LDLR-212ENST00000560467 IFNL2Q8IZJ0 200 aa15.82■□□□□ 0.12
LDLR-212ENST00000560467 MAP2P11137 1827 aaKnown RBP15.82■□□□□ 0.12
LDLR-212ENST00000560467 ITGB4P16144 1822 aa15.82■□□□□ 0.12
LDLR-212ENST00000560467 KDRP35968 1356 aa15.81■□□□□ 0.12
LDLR-212ENST00000560467 CC2D1BQ5T0F9 858 aaKnown RBP15.81■□□□□ 0.12
LDLR-212ENST00000560467 PRKRIP1Q9H875 184 aaPredicted RBP15.81■□□□□ 0.12
LDLR-212ENST00000560467 ANKRD26Q9UPS8 1709 aa15.81■□□□□ 0.12
LDLR-212ENST00000560467 PXDNLA1KZ92 1463 aa15.8■□□□□ 0.12
LDLR-212ENST00000560467 CCER2I3L3R5 266 aa15.8■□□□□ 0.12
LDLR-212ENST00000560467 HSPA6P17066 643 aa15.8■□□□□ 0.12
LDLR-212ENST00000560467 IFFO2Q5TF58 517 aa15.8■□□□□ 0.12
LDLR-212ENST00000560467 SLC4A9Q96Q91 983 aa15.8■□□□□ 0.12
LDLR-212ENST00000560467 MORC1Q86VD1 984 aa15.79■□□□□ 0.12
LDLR-212ENST00000560467 NPC1L1Q9UHC9 1359 aa15.78■□□□□ 0.12
LDLR-212ENST00000560467 KIF3CO14782 793 aa15.78■□□□□ 0.12
LDLR-212ENST00000560467 RBM42Q9BTD8 480 aaKnown RBP15.77■□□□□ 0.12
LDLR-212ENST00000560467 RTCBQ9Y3I0 505 aaKnown RBP15.77■□□□□ 0.12
LDLR-212ENST00000560467 C10orf71Q711Q0 1435 aa15.77■□□□□ 0.11
LDLR-212ENST00000560467 CICQ96RK0 1608 aaPredicted RBP15.76■□□□□ 0.11
LDLR-212ENST00000560467 A0A0G2JLW4 131 aa15.76■□□□□ 0.11
LDLR-212ENST00000560467 AMER1Q5JTC6 1135 aaPredicted RBP15.76■□□□□ 0.11
LDLR-212ENST00000560467 TRAPPC3LQ5T215 181 aa15.76■□□□□ 0.11
LDLR-212ENST00000560467 KDM6AO15550 1401 aaPredicted RBP15.76■□□□□ 0.11
LDLR-212ENST00000560467 ERVV-2B6SEH9 535 aa15.75■□□□□ 0.11
LDLR-212ENST00000560467 ARHGEF1Q92888 912 aaKnown RBP15.75■□□□□ 0.11
LDLR-212ENST00000560467 BCS1LQ9Y276 419 aa15.75■□□□□ 0.11
LDLR-212ENST00000560467 MYBBP1AQ9BQG0 1328 aaKnown RBP15.74■□□□□ 0.11
LDLR-212ENST00000560467 CNTNAP4Q9C0A0 1308 aa15.74■□□□□ 0.11
LDLR-212ENST00000560467 DPEP1P16444 411 aa15.74■□□□□ 0.11
LDLR-212ENST00000560467 ZNF530Q6P9A1 599 aaPredicted RBP15.74■□□□□ 0.11
LDLR-212ENST00000560467 NLGN1Q8N2Q7 840 aa15.74■□□□□ 0.11
LDLR-212ENST00000560467 DCAF5Q96JK2 942 aa15.74■□□□□ 0.11
LDLR-212ENST00000560467 PLEKHG2Q9H7P9 1386 aa15.74■□□□□ 0.11
LDLR-212ENST00000560467 GYS1P13807 737 aa15.73■□□□□ 0.11
LDLR-212ENST00000560467 ADRA2BP18089 450 aa15.73■□□□□ 0.11
LDLR-212ENST00000560467 TGFB2P61812 414 aa15.73■□□□□ 0.11
LDLR-212ENST00000560467 AEBP1Q8IUX7 1158 aa15.73■□□□□ 0.11
LDLR-212ENST00000560467 HSP90AB1P08238 724 aaKnown RBP15.72■□□□□ 0.11
LDLR-212ENST00000560467 CABP4P57796 275 aa15.72■□□□□ 0.11
LDLR-212ENST00000560467 PLEKHO1Q53GL0 409 aaPredicted RBP15.72■□□□□ 0.11
LDLR-212ENST00000560467 RC3H1Q5TC82 1133 aaKnown RBP15.72■□□□□ 0.11
LDLR-212ENST00000560467 MRS2Q9HD23 443 aa15.72■□□□□ 0.11
LDLR-212ENST00000560467 CCDC87Q9NVE4 849 aa15.72■□□□□ 0.11
LDLR-212ENST00000560467 PTCD1O75127 700 aaKnown RBP15.71■□□□□ 0.11
LDLR-212ENST00000560467 RPS6KA4O75676 772 aa15.71■□□□□ 0.11
LDLR-212ENST00000560467 RFC4P35249 363 aa15.71■□□□□ 0.11
LDLR-212ENST00000560467 ARHGAP27Q6ZUM4 889 aa15.71■□□□□ 0.11
LDLR-212ENST00000560467 KIAA1551Q9HCM1 1747 aa15.71■□□□□ 0.1
LDLR-212ENST00000560467 FCHSD2O94868 740 aa15.7■□□□□ 0.1
LDLR-212ENST00000560467 SRP68Q9UHB9 627 aaKnown RBP15.7■□□□□ 0.1
LDLR-212ENST00000560467 PARP3Q9Y6F1 533 aa15.7■□□□□ 0.1
LDLR-212ENST00000560467 CFAP53Q96M91 514 aa15.69■□□□□ 0.1
LDLR-212ENST00000560467 NMRK2Q9NPI5 230 aa15.69■□□□□ 0.1
LDLR-212ENST00000560467 C4AP0C0L4 1744 aa15.68■□□□□ 0.1
LDLR-212ENST00000560467 CRKLP46109 303 aaKnown RBP15.68■□□□□ 0.1
LDLR-212ENST00000560467 MTHFSP49914 203 aa15.68■□□□□ 0.1
LDLR-212ENST00000560467 DDR1Q08345 913 aa15.68■□□□□ 0.1
LDLR-212ENST00000560467 FKBP8Q14318 412 aa15.68■□□□□ 0.1
LDLR-212ENST00000560467 AMOTQ4VCS5 1084 aa15.68■□□□□ 0.1
LDLR-212ENST00000560467 KIF13BQ9NQT8 1826 aa15.67■□□□□ 0.1
LDLR-212ENST00000560467 KCNA3P22001 575 aa15.67■□□□□ 0.1
LDLR-212ENST00000560467 PPP2R1AP30153 589 aa15.67■□□□□ 0.1
LDLR-212ENST00000560467 C1orf141Q5JVX7 400 aa15.67■□□□□ 0.1
LDLR-212ENST00000560467 N4BP2Q86UW6 1770 aaPredicted RBP15.67■□□□□ 0.1
LDLR-212ENST00000560467 APLP1P51693 650 aa15.66■□□□□ 0.1
LDLR-212ENST00000560467 C9orf131Q5VYM1 1079 aa15.66■□□□□ 0.1
LDLR-212ENST00000560467 SULT6B1Q6IMI4 303 aa15.66■□□□□ 0.1
LDLR-212ENST00000560467 NFATC2IPQ8NCF5 419 aa15.66■□□□□ 0.1
LDLR-212ENST00000560467 USP42Q9H9J4 1324 aaKnown RBP15.66■□□□□ 0.1
LDLR-212ENST00000560467 COL5A3P25940 1745 aaPredicted RBP15.65■□□□□ 0.1
LDLR-212ENST00000560467 ZNF831Q5JPB2 1677 aa15.65■□□□□ 0.1
LDLR-212ENST00000560467 TOMM70O94826 608 aa15.65■□□□□ 0.1
LDLR-212ENST00000560467 CHRNA5P30532 468 aa15.64■□□□□ 0.09
LDLR-212ENST00000560467 INTS5Q6P9B9 1019 aaKnown RBP15.64■□□□□ 0.09
LDLR-212ENST00000560467 PIM2Q9P1W9 311 aa15.64■□□□□ 0.09
LDLR-212ENST00000560467 DALRD3Q5D0E6 543 aaKnown RBP15.63■□□□□ 0.09
LDLR-212ENST00000560467 MYH14Q7Z406 1995 aaKnown RBP15.62■□□□□ 0.09
LDLR-212ENST00000560467 IL13P35225 146 aa15.62■□□□□ 0.09
LDLR-212ENST00000560467 WDR43Q15061 677 aaKnown RBP eCLIP15.62■□□□□ 0.09
LDLR-212ENST00000560467 DNAJC10Q8IXB1 793 aa15.62■□□□□ 0.09
LDLR-212ENST00000560467 DNAJC5GQ8N7S2 189 aa15.62■□□□□ 0.09
LDLR-212ENST00000560467 POLRMTO00411 1230 aaKnown RBP15.61■□□□□ 0.09
LDLR-212ENST00000560467 RNF181Q9P0P0 153 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms