RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 TMEM214Q6NUQ4 689 aaKnown RBP6.62□□□□□ -1.35
VPS13C-205ENST00000558088 SNRKQ9NRH2 765 aa6.62□□□□□ -1.35
VPS13C-205ENST00000558088 LRRC4BQ9NT99 713 aa6.62□□□□□ -1.35
VPS13C-205ENST00000558088 CEP126Q9P2H0 1117 aa6.62□□□□□ -1.35
VPS13C-205ENST00000558088 CENPCQ03188 943 aa6.61□□□□□ -1.35
VPS13C-205ENST00000558088 SLFNL1Q499Z3 407 aa6.61□□□□□ -1.35
VPS13C-205ENST00000558088 GPAMQ9HCL2 828 aa6.61□□□□□ -1.35
VPS13C-205ENST00000558088 DOLKQ9UPQ8 538 aa6.61□□□□□ -1.35
VPS13C-205ENST00000558088 PHKA2P46019 1235 aa6.6□□□□□ -1.35
VPS13C-205ENST00000558088 USP4Q13107 963 aa6.6□□□□□ -1.35
VPS13C-205ENST00000558088 ACDQ96AP0 544 aa6.6□□□□□ -1.35
VPS13C-205ENST00000558088 SIRT1Q96EB6 747 aa6.6□□□□□ -1.35
VPS13C-205ENST00000558088 CFHR5Q9BXR6 569 aa6.6□□□□□ -1.35
VPS13C-205ENST00000558088 GPR37L1O60883 481 aa6.59□□□□□ -1.35
VPS13C-205ENST00000558088 IL2RAP01589 272 aa6.59□□□□□ -1.35
VPS13C-205ENST00000558088 LBRQ14739 615 aaKnown RBP6.59□□□□□ -1.35
VPS13C-205ENST00000558088 EFHC2Q5JST6 749 aa6.59□□□□□ -1.35
VPS13C-205ENST00000558088 CCDC85AQ96PX6 553 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-205ENST00000558088 OXCT2Q9BYC2 517 aaPredicted RBP6.59□□□□□ -1.35
VPS13C-205ENST00000558088 RNF135Q8IUD6 432 aa6.58□□□□□ -1.36
VPS13C-205ENST00000558088 XAGE2Q96GT9 111 aa6.58□□□□□ -1.36
VPS13C-205ENST00000558088 CDCA7Q9BWT1 371 aaPredicted RBP6.58□□□□□ -1.36
VPS13C-205ENST00000558088 TBC1D2BQ9UPU7 963 aa6.58□□□□□ -1.36
VPS13C-205ENST00000558088 CNTNAP5Q8WYK1 1306 aa6.57□□□□□ -1.36
VPS13C-205ENST00000558088 OIP5O43482 229 aa6.57□□□□□ -1.36
VPS13C-205ENST00000558088 GDF2Q9UK05 429 aaPredicted RBP6.57□□□□□ -1.36
VPS13C-205ENST00000558088 MSTNO14793 375 aa6.56□□□□□ -1.36
VPS13C-205ENST00000558088 TLR1Q15399 786 aa6.56□□□□□ -1.36
VPS13C-205ENST00000558088 OXLD1Q5BKU9 147 aa6.56□□□□□ -1.36
VPS13C-205ENST00000558088 RHBDD1Q8TEB9 315 aa6.56□□□□□ -1.36
VPS13C-205ENST00000558088 DCAF5Q96JK2 942 aa6.56□□□□□ -1.36
VPS13C-205ENST00000558088 BMP4P12644 408 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 MSX1P28360 303 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 C4orf17Q53FE4 359 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 TBC1D9Q6ZT07 1266 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 GOLGA6L1Q8N7Z2 621 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 GALNT6Q8NCL4 622 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 FHDC1Q9C0D6 1143 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-205ENST00000558088 RUBCNLQ9H714 662 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 RRAGCQ9HB90 399 aa6.55□□□□□ -1.36
VPS13C-205ENST00000558088 ATXN7L1Q9ULK2 861 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-205ENST00000558088 PIK3R2O00459 728 aa6.54□□□□□ -1.36
VPS13C-205ENST00000558088 FIGNL1Q6PIW4 674 aa6.54□□□□□ -1.36
VPS13C-205ENST00000558088 MKL2Q9ULH7 1088 aa6.54□□□□□ -1.36
VPS13C-205ENST00000558088 HRH3Q9Y5N1 445 aa6.54□□□□□ -1.36
VPS13C-205ENST00000558088 AMPD1P23109 780 aa6.53□□□□□ -1.36
VPS13C-205ENST00000558088 WASHC4Q2M389 1173 aa6.53□□□□□ -1.36
VPS13C-205ENST00000558088 PLA2G4EQ3MJ16 856 aa6.53□□□□□ -1.36
VPS13C-205ENST00000558088 PPARGC1BQ86YN6 1023 aaKnown RBP6.53□□□□□ -1.36
VPS13C-205ENST00000558088 KLRG1Q96E93 195 aa6.53□□□□□ -1.36
VPS13C-205ENST00000558088 ETNK1Q9HBU6 452 aa6.53□□□□□ -1.36
VPS13C-205ENST00000558088 ABL2P42684 1182 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 PLA2G4AP47712 749 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 VAC14Q08AM6 782 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 SEMA3FQ13275 785 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 MAP7D1Q3KQU3 841 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 ALYREFQ86V81 257 aaKnown RBP6.52□□□□□ -1.37
VPS13C-205ENST00000558088 PHTF2Q8N3S3 785 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 C1orf216Q8TAB5 229 aa6.52□□□□□ -1.37
VPS13C-205ENST00000558088 NIFKQ9BYG3 293 aaKnown RBP6.52□□□□□ -1.37
VPS13C-205ENST00000558088 FGFR3P22607 806 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 SOX11P35716 441 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 GDF10P55107 478 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 IRF5Q13568 498 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 NBPF1Q3BBV0 1214 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 TPRNQ4KMQ1 711 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 EDARADDQ8WWZ3 215 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 ABHD17AQ96GS6 310 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 SPOCK3Q9BQ16 436 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 CRISPLD1Q9H336 500 aa6.51□□□□□ -1.37
VPS13C-205ENST00000558088 INHAP05111 366 aa6.5□□□□□ -1.37
VPS13C-205ENST00000558088 THBS1P07996 1170 aa6.5□□□□□ -1.37
VPS13C-205ENST00000558088 AIDAQ96BJ3 306 aa6.5□□□□□ -1.37
VPS13C-205ENST00000558088 GDPD2Q9HCC8 539 aa6.5□□□□□ -1.37
VPS13C-205ENST00000558088 SHISA8B8ZZ34 492 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 TATP17735 454 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-205ENST00000558088 TSGA10IPQ3SY00 556 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 ARSJQ5FYB0 599 aaPredicted RBP6.49□□□□□ -1.37
VPS13C-205ENST00000558088 SLCO4C1Q6ZQN7 724 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 NLRP8Q86W28 1048 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 PLPP7Q8NBV4 271 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 CHIC2Q9UKJ5 165 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 PCDHGC4Q9Y5F7 938 aa6.49□□□□□ -1.37
VPS13C-205ENST00000558088 BNIP3LO60238 219 aa6.48□□□□□ -1.37
VPS13C-205ENST00000558088 STAU1O95793 577 aaKnown RBP6.48□□□□□ -1.37
VPS13C-205ENST00000558088 SMTNP53814 917 aa6.48□□□□□ -1.37
VPS13C-205ENST00000558088 SNRPNP63162 240 aaKnown RBP6.48□□□□□ -1.37
VPS13C-205ENST00000558088 UBAP2LQ14157 1087 aaKnown RBP6.48□□□□□ -1.37
VPS13C-205ENST00000558088 WWC1Q8IX03 1113 aa6.48□□□□□ -1.37
VPS13C-205ENST00000558088 GGA1Q9UJY5 639 aa6.48□□□□□ -1.37
VPS13C-205ENST00000558088 GJA3Q9Y6H8 435 aa6.48□□□□□ -1.37
VPS13C-205ENST00000558088 ATXN7O15265 892 aaPredicted RBP6.47□□□□□ -1.37
VPS13C-205ENST00000558088 ARAFP10398 606 aa6.47□□□□□ -1.37
VPS13C-205ENST00000558088 SCNN1DP51172 638 aa6.47□□□□□ -1.37
VPS13C-205ENST00000558088 GRIN2CQ14957 1233 aa6.47□□□□□ -1.37
VPS13C-205ENST00000558088 SERTAD1Q9UHV2 236 aa6.47□□□□□ -1.37
VPS13C-205ENST00000558088 GNB5O14775 395 aa6.46□□□□□ -1.38
VPS13C-205ENST00000558088 CTBSQ01459 385 aa6.46□□□□□ -1.38
VPS13C-205ENST00000558088 ZCCHC2Q9C0B9 1178 aaKnown RBP6.46□□□□□ -1.38
VPS13C-205ENST00000558088 NDFIP2Q9NV92 336 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms