RNA–Protein interactions for RNA: ENST00000552008.5

LIMA1-209, Transcript of LIM domain and actin binding 1, humanhuman

TSL 5

Gene LIMA1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-209ENST00000552008 WASLO00401 505 aaPredicted RBP5.07□□□□□ -1.6
LIMA1-209ENST00000552008 C2CD2LO14523 706 aa5.07□□□□□ -1.6
LIMA1-209ENST00000552008 SPATA31C1P0DKV0 1188 aa5.07□□□□□ -1.6
LIMA1-209ENST00000552008 TAS1R3Q7RTX0 852 aa5.07□□□□□ -1.6
LIMA1-209ENST00000552008 DZIP3Q86Y13 1208 aaKnown RBP5.07□□□□□ -1.6
LIMA1-209ENST00000552008 RNF135Q8IUD6 432 aa5.06□□□□□ -1.6
LIMA1-209ENST00000552008 ATXN7L1Q9ULK2 861 aaPredicted RBP5.06□□□□□ -1.6
LIMA1-209ENST00000552008 NEURL1BA8MQ27 555 aa5.05□□□□□ -1.6
LIMA1-209ENST00000552008 CTDSPL2Q05D32 466 aa5.05□□□□□ -1.6
LIMA1-209ENST00000552008 UBAP2LQ14157 1087 aaKnown RBP5.05□□□□□ -1.6
LIMA1-209ENST00000552008 MYSM1Q5VVJ2 828 aa5.05□□□□□ -1.6
LIMA1-209ENST00000552008 PPP2R2DQ66LE6 453 aa5.05□□□□□ -1.6
LIMA1-209ENST00000552008 CHSY3Q70JA7 882 aa5.05□□□□□ -1.6
LIMA1-209ENST00000552008 PLVAPQ9BX97 442 aa5.05□□□□□ -1.6
LIMA1-209ENST00000552008 HYAL3O43820 417 aaPredicted RBP5.04□□□□□ -1.6
LIMA1-209ENST00000552008 ARAFP10398 606 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 FGFR3P22607 806 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 CTBSQ01459 385 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 LBRQ14739 615 aaKnown RBP5.04□□□□□ -1.6
LIMA1-209ENST00000552008 NR6A1Q15406 480 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 MCTP1Q6DN14 999 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 PARP9Q8IXQ6 854 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 SEPT12Q8IYM1 358 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 LRRN4Q8WUT4 740 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 TRIM11Q96F44 468 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 ABHD17AQ96GS6 310 aa5.04□□□□□ -1.6
LIMA1-209ENST00000552008 YBX3P16989 372 aaKnown RBP eCLIP5.03□□□□□ -1.6
LIMA1-209ENST00000552008 CLN3Q13286 438 aa5.03□□□□□ -1.6
LIMA1-209ENST00000552008 A0A1B0GTH6 734 aa5.02□□□□□ -1.61
LIMA1-209ENST00000552008 APBA3O96018 575 aa5.02□□□□□ -1.61
LIMA1-209ENST00000552008 CSB-PGBD3P0DP91 1061 aa5.02□□□□□ -1.61
LIMA1-209ENST00000552008 PGBD3Q8N328 593 aa5.02□□□□□ -1.61
LIMA1-209ENST00000552008 EFHC2Q5JST6 749 aa5.01□□□□□ -1.61
LIMA1-209ENST00000552008 RUBCNLQ9H714 662 aa5.01□□□□□ -1.61
LIMA1-209ENST00000552008 NDFIP2Q9NV92 336 aa5.01□□□□□ -1.61
LIMA1-209ENST00000552008 PAX4O43316 350 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 BNIP3LO60238 219 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 TXKP42681 527 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 PHKA2P46019 1235 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 CLK2P49760 499 aaKnown RBP5□□□□□ -1.61
LIMA1-209ENST00000552008 ERVK-9P63128 1117 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 PRRT3Q5FWE3 981 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 CC2D2BQ6DHV5 1058 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 BARGINQ6ZT62 677 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 CYP2U1Q7Z449 544 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 ARHGEF10LQ9HCE6 1279 aa5□□□□□ -1.61
LIMA1-209ENST00000552008 SPDYE3A6NKU9 549 aa4.99□□□□□ -1.61
LIMA1-209ENST00000552008 ADH6P28332 368 aa4.99□□□□□ -1.61
LIMA1-209ENST00000552008 FCHSD1Q86WN1 690 aa4.98□□□□□ -1.61
LIMA1-209ENST00000552008 PNMA1Q8ND90 353 aa4.98□□□□□ -1.61
LIMA1-209ENST00000552008 KRTAP4-9Q9BYQ8 210 aa4.98□□□□□ -1.61
LIMA1-209ENST00000552008 GIGYF1O75420 1035 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-209ENST00000552008 H2AFB1P0C5Y9 115 aa4.97□□□□□ -1.61
LIMA1-209ENST00000552008 H2AFB2P0C5Z0 115 aa4.97□□□□□ -1.61
LIMA1-209ENST00000552008 MSX1P28360 303 aa4.97□□□□□ -1.61
LIMA1-209ENST00000552008 CCDC125Q86Z20 511 aa4.96□□□□□ -1.62
LIMA1-209ENST00000552008 NACC1Q96RE7 527 aa4.96□□□□□ -1.62
LIMA1-209ENST00000552008 RAB6BQ9NRW1 208 aa4.96□□□□□ -1.62
LIMA1-209ENST00000552008 KLF15Q9UIH9 416 aa4.96□□□□□ -1.62
LIMA1-209ENST00000552008 COL17A1Q9UMD9 1497 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-209ENST00000552008 CENPCQ03188 943 aa4.95□□□□□ -1.62
LIMA1-209ENST00000552008 GNASQ5JWF2 1037 aa4.95□□□□□ -1.62
LIMA1-209ENST00000552008 FIGNL1Q6PIW4 674 aa4.95□□□□□ -1.62
LIMA1-209ENST00000552008 EPS8L1Q8TE68 723 aa4.95□□□□□ -1.62
LIMA1-209ENST00000552008 CNKSR1Q969H4 720 aa4.95□□□□□ -1.62
LIMA1-209ENST00000552008 FMNL2Q96PY5 1086 aa4.95□□□□□ -1.62
LIMA1-209ENST00000552008 ZSCAN10Q96SZ4 725 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-209ENST00000552008 AVENQ9NQS1 362 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-209ENST00000552008 FAM229AH3BQW9 127 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 ZMYND10O75800 440 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 ELNP15502 786 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 GTF2E1P29083 439 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-209ENST00000552008 SCTRP47872 440 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 C4orf17Q53FE4 359 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 ESYT1Q9BSJ8 1104 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 CRISPLD1Q9H336 500 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 OSBPL3Q9H4L5 887 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 POLR3EQ9NVU0 708 aa4.94□□□□□ -1.62
LIMA1-209ENST00000552008 TRIM66O15016 1216 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 TRAK2O60296 914 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 IL2RAP01589 272 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 FZD5Q13467 585 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 TPRNQ4KMQ1 711 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 TMEM214Q6NUQ4 689 aaKnown RBP4.93□□□□□ -1.62
LIMA1-209ENST00000552008 DHX30Q7L2E3 1194 aaKnown RBP eCLIP4.93□□□□□ -1.62
LIMA1-209ENST00000552008 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 ZCCHC2Q9C0B9 1178 aaKnown RBP4.93□□□□□ -1.62
LIMA1-209ENST00000552008 ESF1Q9H501 851 aaKnown RBP4.93□□□□□ -1.62
LIMA1-209ENST00000552008 PCDHB9Q9Y5E1 797 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 PCDHGC4Q9Y5F7 938 aa4.93□□□□□ -1.62
LIMA1-209ENST00000552008 ARID1BQ8NFD5 2236 aaPredicted RBP4.93□□□□□ -1.62
LIMA1-209ENST00000552008 CD33P20138 364 aa4.92□□□□□ -1.62
LIMA1-209ENST00000552008 PCBP4P57723 403 aaKnown RBP4.92□□□□□ -1.62
LIMA1-209ENST00000552008 TRIM28Q13263 835 aaKnown RBP4.92□□□□□ -1.62
LIMA1-209ENST00000552008 FAM182BQ5T319 152 aa4.92□□□□□ -1.62
LIMA1-209ENST00000552008 RNF20Q5VTR2 975 aa4.92□□□□□ -1.62
LIMA1-209ENST00000552008 DNAAF2Q9NVR5 837 aaKnown RBP4.92□□□□□ -1.62
LIMA1-209ENST00000552008 ATXN7O15265 892 aaPredicted RBP4.91□□□□□ -1.62
LIMA1-209ENST00000552008 GNRH1P01148 92 aa4.91□□□□□ -1.62
LIMA1-209ENST00000552008 GRIK4Q16099 956 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms