RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 AP1G2O75843 785 aa7.12□□□□□ -1.27
LIMA1-206ENST00000550611 CC2D2BQ6DHV5 1058 aa7.12□□□□□ -1.27
LIMA1-206ENST00000550611 C1orf229Q6ZS94 237 aaPredicted RBP7.12□□□□□ -1.27
LIMA1-206ENST00000550611 TAS1R3Q7RTX0 852 aa7.12□□□□□ -1.27
LIMA1-206ENST00000550611 PHF24Q9UPV7 400 aa7.12□□□□□ -1.27
LIMA1-206ENST00000550611 WASLO00401 505 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-206ENST00000550611 GIGYF1O75420 1035 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-206ENST00000550611 HOXB4P17483 251 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-206ENST00000550611 LINC00114Q6XXX2 140 aa7.11□□□□□ -1.27
LIMA1-206ENST00000550611 CYP2U1Q7Z449 544 aa7.11□□□□□ -1.27
LIMA1-206ENST00000550611 GOLGA6L1Q8N7Z2 621 aa7.11□□□□□ -1.27
LIMA1-206ENST00000550611 EDARADDQ8WWZ3 215 aa7.11□□□□□ -1.27
LIMA1-206ENST00000550611 RRAGCQ9HB90 399 aa7.11□□□□□ -1.27
LIMA1-206ENST00000550611 HMX1Q9NP08 348 aaPredicted RBP7.11□□□□□ -1.27
LIMA1-206ENST00000550611 KIF21AQ7Z4S6 1674 aa7.1□□□□□ -1.27
LIMA1-206ENST00000550611 THBS1P07996 1170 aa7.1□□□□□ -1.27
LIMA1-206ENST00000550611 PROCA1Q8NCQ7 364 aaPredicted RBP7.1□□□□□ -1.27
LIMA1-206ENST00000550611 USP17L8P0C7I0 530 aa7.09□□□□□ -1.27
LIMA1-206ENST00000550611 LBRQ14739 615 aaKnown RBP7.09□□□□□ -1.27
LIMA1-206ENST00000550611 GRIN2CQ14957 1233 aa7.09□□□□□ -1.27
LIMA1-206ENST00000550611 RNF20Q5VTR2 975 aa7.09□□□□□ -1.27
LIMA1-206ENST00000550611 C1QTNF9BB2RNN3 333 aa7.08□□□□□ -1.28
LIMA1-206ENST00000550611 GNB5O14775 395 aa7.08□□□□□ -1.28
LIMA1-206ENST00000550611 SLCO4C1Q6ZQN7 724 aa7.08□□□□□ -1.28
LIMA1-206ENST00000550611 CD163Q86VB7 1156 aa7.08□□□□□ -1.28
LIMA1-206ENST00000550611 ZBBXA8MT70 800 aa7.07□□□□□ -1.28
LIMA1-206ENST00000550611 UBAP2LQ14157 1087 aaKnown RBP7.07□□□□□ -1.28
LIMA1-206ENST00000550611 SUV39H2Q9H5I1 410 aa7.07□□□□□ -1.28
LIMA1-206ENST00000550611 SLC24A3Q9HC58 644 aa7.07□□□□□ -1.28
LIMA1-206ENST00000550611 PCDHB9Q9Y5E1 797 aa7.07□□□□□ -1.28
LIMA1-206ENST00000550611 ARHGEF11O15085 1522 aa7.06□□□□□ -1.28
LIMA1-206ENST00000550611 A0A1B0GTH6 734 aa7.06□□□□□ -1.28
LIMA1-206ENST00000550611 TRAK2O60296 914 aa7.06□□□□□ -1.28
LIMA1-206ENST00000550611 ITGB7P26010 798 aa7.06□□□□□ -1.28
LIMA1-206ENST00000550611 ARHGEF10LQ9HCE6 1279 aa7.06□□□□□ -1.28
LIMA1-206ENST00000550611 ATXN7L1Q9ULK2 861 aaPredicted RBP7.06□□□□□ -1.28
LIMA1-206ENST00000550611 HMGXB3Q12766 1538 aa7.06□□□□□ -1.28
LIMA1-206ENST00000550611 PDS5BQ9NTI5 1447 aa7.05□□□□□ -1.28
LIMA1-206ENST00000550611 AMPD1P23109 780 aa7.05□□□□□ -1.28
LIMA1-206ENST00000550611 SCTRP47872 440 aa7.05□□□□□ -1.28
LIMA1-206ENST00000550611 MCCD1P59942 119 aaPredicted RBP7.05□□□□□ -1.28
LIMA1-206ENST00000550611 TRIM34Q9BYJ4 488 aa7.05□□□□□ -1.28
LIMA1-206ENST00000550611 OSBPL3Q9H4L5 887 aa7.05□□□□□ -1.28
LIMA1-206ENST00000550611 GPAMQ9HCL2 828 aa7.05□□□□□ -1.28
LIMA1-206ENST00000550611 NOP53Q9NZM5 478 aaKnown RBP7.05□□□□□ -1.28
LIMA1-206ENST00000550611 GNRH1P01148 92 aa7.04□□□□□ -1.28
LIMA1-206ENST00000550611 EPXP11678 715 aa7.04□□□□□ -1.28
LIMA1-206ENST00000550611 BMP4P12644 408 aa7.04□□□□□ -1.28
LIMA1-206ENST00000550611 BTBD6Q96KE9 485 aa7.04□□□□□ -1.28
LIMA1-206ENST00000550611 ESYT1Q9BSJ8 1104 aa7.04□□□□□ -1.28
LIMA1-206ENST00000550611 GGA1Q9UJY5 639 aa7.04□□□□□ -1.28
LIMA1-206ENST00000550611 C2CD2LO14523 706 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 FBXO45P0C2W1 286 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 CHRNA4P43681 627 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 DGKGP49619 791 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 ZNF592Q92610 1267 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 DDRGK1Q96HY6 314 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 NDFIP2Q9NV92 336 aa7.03□□□□□ -1.28
LIMA1-206ENST00000550611 CSB-PGBD3P0DP91 1061 aa7.02□□□□□ -1.29
LIMA1-206ENST00000550611 CENPCQ03188 943 aa7.02□□□□□ -1.29
LIMA1-206ENST00000550611 PGBD3Q8N328 593 aa7.02□□□□□ -1.29
LIMA1-206ENST00000550611 CNKSR1Q969H4 720 aa7.02□□□□□ -1.29
LIMA1-206ENST00000550611 ATP1B4Q9UN42 357 aaPredicted RBP7.02□□□□□ -1.29
LIMA1-206ENST00000550611 HRH3Q9Y5N1 445 aa7.02□□□□□ -1.29
LIMA1-206ENST00000550611 SMARCA4P51532 1647 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 LAMC3Q9Y6N6 1575 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 MRC2Q9UBG0 1479 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 IL2RAP01589 272 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 ARAFP10398 606 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 FGFR3P22607 806 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 EFHC2Q5JST6 749 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 ZMYM1Q5SVZ6 1142 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 KRTAP1-3Q8IUG1 177 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 SEMA6BQ9H3T3 888 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 ESF1Q9H501 851 aaKnown RBP7.01□□□□□ -1.29
LIMA1-206ENST00000550611 PCDHB11Q9Y5F2 797 aa7.01□□□□□ -1.29
LIMA1-206ENST00000550611 RFC5P40937 340 aa7□□□□□ -1.29
LIMA1-206ENST00000550611 GNASQ5JWF2 1037 aa7□□□□□ -1.29
LIMA1-206ENST00000550611 ABHD17AQ96GS6 310 aa7□□□□□ -1.29
LIMA1-206ENST00000550611 ZSCAN10Q96SZ4 725 aaPredicted RBP7□□□□□ -1.29
LIMA1-206ENST00000550611 BAZ1BQ9UIG0 1483 aaKnown RBP6.99□□□□□ -1.29
LIMA1-206ENST00000550611 MSX1P28360 303 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 PHKA2P46019 1235 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 CTBSQ01459 385 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 RNF135Q8IUD6 432 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 XAGE2Q96GT9 111 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 FHDC1Q9C0D6 1143 aaPredicted RBP6.99□□□□□ -1.29
LIMA1-206ENST00000550611 CRISPLD1Q9H336 500 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 RUBCNLQ9H714 662 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 RAB6BQ9NRW1 208 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 PEG3Q9GZU2 1588 aa6.99□□□□□ -1.29
LIMA1-206ENST00000550611 ARAP1Q96P48 1450 aa6.98□□□□□ -1.29
LIMA1-206ENST00000550611 WDR62O43379 1518 aa6.98□□□□□ -1.29
LIMA1-206ENST00000550611 BNIP3LO60238 219 aa6.98□□□□□ -1.29
LIMA1-206ENST00000550611 DOC2BQ14184 412 aa6.98□□□□□ -1.29
LIMA1-206ENST00000550611 C4orf17Q53FE4 359 aa6.98□□□□□ -1.29
LIMA1-206ENST00000550611 FAM117AQ9C073 453 aa6.98□□□□□ -1.29
LIMA1-206ENST00000550611 GTF2E1P29083 439 aaPredicted RBP6.97□□□□□ -1.29
LIMA1-206ENST00000550611 TMEM259Q4ZIN3 620 aa6.97□□□□□ -1.29
LIMA1-206ENST00000550611 KDM4CQ9H3R0 1056 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms