RNA–Protein interactions for RNA: ENST00000517862.1

CPNE3-204, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 654 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-204ENST00000517862 KCNA6P17658 529 aa5.89□□□□□ -1.47
CPNE3-204ENST00000517862 PRPF38BQ5VTL8 546 aaKnown RBP5.89□□□□□ -1.47
CPNE3-204ENST00000517862 SLC17A8Q8NDX2 589 aa5.89□□□□□ -1.47
CPNE3-204ENST00000517862 DDX12PQ92771 950 aa5.89□□□□□ -1.47
CPNE3-204ENST00000517862 LARP6Q9BRS8 491 aaKnown RBP5.89□□□□□ -1.47
CPNE3-204ENST00000517862 REPIN1Q9BWE0 567 aaKnown RBP5.89□□□□□ -1.47
CPNE3-204ENST00000517862 IGF1RP08069 1367 aa5.89□□□□□ -1.47
CPNE3-204ENST00000517862 TNS1Q9HBL0 1735 aaKnown RBP5.88□□□□□ -1.47
CPNE3-204ENST00000517862 FBXO31Q5XUX0 539 aaPredicted RBP5.88□□□□□ -1.47
CPNE3-204ENST00000517862 CADPS2Q86UW7 1296 aa5.88□□□□□ -1.47
CPNE3-204ENST00000517862 NUP188Q5SRE5 1749 aa5.88□□□□□ -1.47
CPNE3-204ENST00000517862 TOMM70O94826 608 aa5.87□□□□□ -1.47
CPNE3-204ENST00000517862 ZBTB7AO95365 584 aa5.87□□□□□ -1.47
CPNE3-204ENST00000517862 HNRNPMP52272 730 aaKnown RBP eCLIP5.87□□□□□ -1.47
CPNE3-204ENST00000517862 ZNF385CQ66K41 422 aaPredicted RBP5.87□□□□□ -1.47
CPNE3-204ENST00000517862 BRINP3Q76B58 766 aa5.87□□□□□ -1.47
CPNE3-204ENST00000517862 FAM9AQ8IZU1 332 aaPredicted RBP5.87□□□□□ -1.47
CPNE3-204ENST00000517862 KCNV2Q8TDN2 545 aa5.87□□□□□ -1.47
CPNE3-204ENST00000517862 SPSB2Q99619 263 aa5.87□□□□□ -1.47
CPNE3-204ENST00000517862 PRDM10Q9NQV6 1147 aa5.87□□□□□ -1.47
CPNE3-204ENST00000517862 RREB1Q92766 1687 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 MLH3Q9UHC1 1453 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 PTCH1Q13635 1447 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 PARD3Q8TEW0 1356 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 CAPN5O15484 640 aaPredicted RBP5.86□□□□□ -1.47
CPNE3-204ENST00000517862 COBLO75128 1261 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 GGT6Q6P531 493 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 CNTNAP3BQ96NU0 1288 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 CNTNAP3Q9BZ76 1288 aa5.86□□□□□ -1.47
CPNE3-204ENST00000517862 ADGRB2O60241 1585 aa5.85□□□□□ -1.47
CPNE3-204ENST00000517862 MAST1Q9Y2H9 1570 aa5.85□□□□□ -1.47
CPNE3-204ENST00000517862 NLRP1Q9C000 1473 aa5.85□□□□□ -1.47
CPNE3-204ENST00000517862 C14orf37Q86TY3 774 aa5.85□□□□□ -1.47
CPNE3-204ENST00000517862 ZFP42Q96MM3 310 aa5.85□□□□□ -1.47
CPNE3-204ENST00000517862 NKTRP30414 1462 aaKnown RBP5.84□□□□□ -1.47
CPNE3-204ENST00000517862 PLEKHD1A6NEE1 506 aa5.84□□□□□ -1.47
CPNE3-204ENST00000517862 TMEM132AQ24JP5 1023 aa5.84□□□□□ -1.47
CPNE3-204ENST00000517862 EFCAB2Q5VUJ9 269 aa5.84□□□□□ -1.47
CPNE3-204ENST00000517862 P3H3Q8IVL6 736 aa5.84□□□□□ -1.47
CPNE3-204ENST00000517862 RBM27Q9P2N5 1060 aaKnown RBP5.84□□□□□ -1.47
CPNE3-204ENST00000517862 CASZ1Q86V15 1759 aa5.84□□□□□ -1.47
CPNE3-204ENST00000517862 CARMIL1Q5VZK9 1371 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 TNKS1BP1Q9C0C2 1729 aaKnown RBP5.83□□□□□ -1.48
CPNE3-204ENST00000517862 GRIN3BO60391 1043 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 APBA3O96018 575 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 SLURP2P0DP57 97 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 ATF3P18847 181 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 FAM182BQ5T319 152 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 TXNDC2Q86VQ3 553 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 GCC1Q96CN9 775 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 DCAF5Q96JK2 942 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 KRTAP4-9Q9BYQ8 210 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 GOLGA3Q08378 1498 aa5.83□□□□□ -1.48
CPNE3-204ENST00000517862 ADCY9O60503 1353 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 MROH1Q8NDA8 1641 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 FOXN1O15353 648 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 LTKP29376 864 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 UNC5CLQ8IV45 518 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 KRTAP4-2Q9BYR5 136 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 WDR70Q9NW82 654 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 KIDINS220Q9ULH0 1771 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 MIA2Q96PC5 1412 aa5.82□□□□□ -1.48
CPNE3-204ENST00000517862 ASXL1Q8IXJ9 1541 aa5.81□□□□□ -1.48
CPNE3-204ENST00000517862 PPP1R15AO75807 674 aaPredicted RBP5.81□□□□□ -1.48
CPNE3-204ENST00000517862 ARHGEF15O94989 841 aa5.81□□□□□ -1.48
CPNE3-204ENST00000517862 CFHP08603 1231 aa5.81□□□□□ -1.48
CPNE3-204ENST00000517862 KRT76Q01546 638 aa5.81□□□□□ -1.48
CPNE3-204ENST00000517862 SCUBE3Q8IX30 993 aa5.81□□□□□ -1.48
CPNE3-204ENST00000517862 PDGFDQ9GZP0 370 aaPredicted RBP5.81□□□□□ -1.48
CPNE3-204ENST00000517862 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.81□□□□□ -1.48
CPNE3-204ENST00000517862 DHX57Q6P158 1386 aaKnown RBP5.8□□□□□ -1.48
CPNE3-204ENST00000517862 MAP3K5Q99683 1374 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 SAMD9LQ8IVG5 1584 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 EFCAB6Q5THR3 1501 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 MARF1Q9Y4F3 1742 aaKnown RBP5.8□□□□□ -1.48
CPNE3-204ENST00000517862 TRIM37O94972 964 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 MFSD10Q14728 455 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 DHX30Q7L2E3 1194 aaKnown RBP eCLIP5.8□□□□□ -1.48
CPNE3-204ENST00000517862 DDX17Q92841 729 aaKnown RBP5.8□□□□□ -1.48
CPNE3-204ENST00000517862 SNX27Q96L92 541 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 ARXQ96QS3 562 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 FMN1Q68DA7 1419 aa5.8□□□□□ -1.48
CPNE3-204ENST00000517862 NCOA2Q15596 1464 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 PHF20L1A8MW92 1017 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 PPFIA3O75145 1194 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 ALDH1A1P00352 501 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 ITGB2P05107 769 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 FURINP09958 794 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 CTCFP49711 727 aaPredicted RBP5.79□□□□□ -1.48
CPNE3-204ENST00000517862 TRIM32Q13049 653 aa5.79□□□□□ -1.48
CPNE3-204ENST00000517862 HABP4Q5JVS0 413 aaKnown RBP5.79□□□□□ -1.48
CPNE3-204ENST00000517862 CCDC9Q9Y3X0 531 aaKnown RBP5.79□□□□□ -1.48
CPNE3-204ENST00000517862 PZPP20742 1482 aa5.78□□□□□ -1.48
CPNE3-204ENST00000517862 SCARF1Q14162 830 aa5.78□□□□□ -1.48
CPNE3-204ENST00000517862 SLC26A8Q96RN1 970 aa5.78□□□□□ -1.48
CPNE3-204ENST00000517862 MYO5CQ9NQX4 1742 aa5.78□□□□□ -1.48
CPNE3-204ENST00000517862 EID1Q9Y6B2 187 aa5.78□□□□□ -1.48
CPNE3-204ENST00000517862 ARHGAP35Q9NRY4 1499 aa5.77□□□□□ -1.49
CPNE3-204ENST00000517862 SOBPA7XYQ1 873 aa5.77□□□□□ -1.49
CPNE3-204ENST00000517862 YBX3P16989 372 aaKnown RBP eCLIP5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms