RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 SIRT1Q96EB6 747 aa9.25□□□□□ -0.93
CPNE3-202ENST00000517391 IVNS1ABPQ9Y6Y0 642 aa9.25□□□□□ -0.93
CPNE3-202ENST00000517391 GIGYF1O75420 1035 aaPredicted RBP9.24□□□□□ -0.93
CPNE3-202ENST00000517391 SEPT12Q8IYM1 358 aa9.24□□□□□ -0.93
CPNE3-202ENST00000517391 CCER1Q8TC90 406 aaPredicted RBP9.24□□□□□ -0.93
CPNE3-202ENST00000517391 SCARF2Q96GP6 870 aaPredicted RBP9.24□□□□□ -0.93
CPNE3-202ENST00000517391 C1QTNF2Q9BXJ5 285 aa9.24□□□□□ -0.93
CPNE3-202ENST00000517391 DNAAF2Q9NVR5 837 aaKnown RBP9.24□□□□□ -0.93
CPNE3-202ENST00000517391 USP4Q13107 963 aa9.23□□□□□ -0.93
CPNE3-202ENST00000517391 TSGA10IPQ3SY00 556 aa9.23□□□□□ -0.93
CPNE3-202ENST00000517391 TRMT44Q8IYL2 757 aaKnown RBP9.23□□□□□ -0.93
CPNE3-202ENST00000517391 GPR161Q8N6U8 529 aaKnown RBP9.23□□□□□ -0.93
CPNE3-202ENST00000517391 CLP1Q92989 425 aaKnown RBP9.23□□□□□ -0.93
CPNE3-202ENST00000517391 CCDC85AQ96PX6 553 aaPredicted RBP9.23□□□□□ -0.93
CPNE3-202ENST00000517391 CDK15Q96Q40 435 aa9.23□□□□□ -0.93
CPNE3-202ENST00000517391 KLF16Q9BXK1 252 aaPredicted RBP9.23□□□□□ -0.93
CPNE3-202ENST00000517391 RBM19Q9Y4C8 960 aaKnown RBP9.23□□□□□ -0.93
CPNE3-202ENST00000517391 ESPNB1AK53 854 aa9.22□□□□□ -0.93
CPNE3-202ENST00000517391 DPYDQ12882 1025 aa9.22□□□□□ -0.93
CPNE3-202ENST00000517391 SWI5Q1ZZU3 235 aa9.22□□□□□ -0.93
CPNE3-202ENST00000517391 RGS22Q8NE09 1264 aa9.22□□□□□ -0.93
CPNE3-202ENST00000517391 PSMG3-AS1Q96PY0 264 aa9.22□□□□□ -0.93
CPNE3-202ENST00000517391 SSFA2P28290 1259 aa9.21□□□□□ -0.94
CPNE3-202ENST00000517391 ARID4AP29374 1257 aaPredicted RBP9.21□□□□□ -0.94
CPNE3-202ENST00000517391 CLDN10P78369 228 aa9.21□□□□□ -0.94
CPNE3-202ENST00000517391 C6orf118Q5T5N4 469 aa9.21□□□□□ -0.94
CPNE3-202ENST00000517391 COL25A1Q9BXS0 654 aaPredicted RBP9.21□□□□□ -0.94
CPNE3-202ENST00000517391 MSTNO14793 375 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 ZBTB7BO15156 539 aaPredicted RBP9.2□□□□□ -0.94
CPNE3-202ENST00000517391 ARHGEF15O94989 841 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 UPP2O95045 317 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 GRM5P41594 1212 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 FAM69CQ0P6D2 419 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 OXLD1Q5BKU9 147 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 SND1Q7KZF4 910 aaKnown RBP eCLIP9.2□□□□□ -0.94
CPNE3-202ENST00000517391 VASH1Q7L8A9 365 aaPredicted RBP9.2□□□□□ -0.94
CPNE3-202ENST00000517391 TRIM52Q96A61 297 aa9.2□□□□□ -0.94
CPNE3-202ENST00000517391 GTF2IP78347 998 aa9.19□□□□□ -0.94
CPNE3-202ENST00000517391 TXNDC2Q86VQ3 553 aa9.19□□□□□ -0.94
CPNE3-202ENST00000517391 SIX5Q8N196 739 aa9.19□□□□□ -0.94
CPNE3-202ENST00000517391 ZNF594Q96JF6 807 aaPredicted RBP9.19□□□□□ -0.94
CPNE3-202ENST00000517391 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.18□□□□□ -0.94
CPNE3-202ENST00000517391 ABCC9O60706 1549 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 SLURP2P0DP57 97 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 SEC13P55735 322 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 CCDC27Q2M243 656 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 PHLDB3Q6NSJ2 640 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 KRTAP9-2Q9BYQ4 174 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 MTMR7Q9Y216 660 aa9.18□□□□□ -0.94
CPNE3-202ENST00000517391 NR3C2P08235 984 aa9.17□□□□□ -0.94
CPNE3-202ENST00000517391 BMP2P12643 396 aa9.17□□□□□ -0.94
CPNE3-202ENST00000517391 FSHRP23945 695 aa9.17□□□□□ -0.94
CPNE3-202ENST00000517391 NR5A1Q13285 461 aa9.17□□□□□ -0.94
CPNE3-202ENST00000517391 NANOS1Q8WY41 292 aaKnown RBP9.17□□□□□ -0.94
CPNE3-202ENST00000517391 PCDHB11Q9Y5F2 797 aa9.17□□□□□ -0.94
CPNE3-202ENST00000517391 ZIC2O95409 532 aaPredicted RBP9.16□□□□□ -0.94
CPNE3-202ENST00000517391 ATP2B4P23634 1241 aa9.16□□□□□ -0.94
CPNE3-202ENST00000517391 CCDC102BQ68D86 513 aa9.16□□□□□ -0.94
CPNE3-202ENST00000517391 KCTD15Q96SI1 283 aaPredicted RBP9.16□□□□□ -0.94
CPNE3-202ENST00000517391 MAP4K5Q9Y4K4 846 aa9.16□□□□□ -0.94
CPNE3-202ENST00000517391 PCDHGA11Q9Y5H2 935 aa9.16□□□□□ -0.94
CPNE3-202ENST00000517391 SOS2Q07890 1332 aaPredicted RBP9.15□□□□□ -0.94
CPNE3-202ENST00000517391 DKK1O94907 266 aa9.15□□□□□ -0.94
CPNE3-202ENST00000517391 MYCP01106 439 aaPredicted RBP9.15□□□□□ -0.94
CPNE3-202ENST00000517391 PSME1Q06323 249 aa9.15□□□□□ -0.94
CPNE3-202ENST00000517391 C1orf216Q8TAB5 229 aa9.15□□□□□ -0.94
CPNE3-202ENST00000517391 WHAMMQ8TF30 809 aa9.15□□□□□ -0.94
CPNE3-202ENST00000517391 DNMT3LQ9UJW3 386 aa9.15□□□□□ -0.94
CPNE3-202ENST00000517391 ESF1Q9H501 851 aaKnown RBP9.14□□□□□ -0.95
CPNE3-202ENST00000517391 ZFAND3Q9H8U3 227 aa9.14□□□□□ -0.95
CPNE3-202ENST00000517391 SLAIN2Q9P270 581 aa9.14□□□□□ -0.95
CPNE3-202ENST00000517391 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.13□□□□□ -0.95
CPNE3-202ENST00000517391 RNFT1Q5M7Z0 435 aa9.13□□□□□ -0.95
CPNE3-202ENST00000517391 LINC00528Q8N1L1 170 aa9.13□□□□□ -0.95
CPNE3-202ENST00000517391 TPCN2Q8NHX9 752 aa9.13□□□□□ -0.95
CPNE3-202ENST00000517391 ITPKCQ96DU7 683 aa9.13□□□□□ -0.95
CPNE3-202ENST00000517391 SPOCK3Q9BQ16 436 aa9.13□□□□□ -0.95
CPNE3-202ENST00000517391 KIAA1024Q9UPX6 916 aa9.13□□□□□ -0.95
CPNE3-202ENST00000517391 KRTAP9-6A0A140TA67 174 aa9.12□□□□□ -0.95
CPNE3-202ENST00000517391 M0R2N6 131 aa9.12□□□□□ -0.95
CPNE3-202ENST00000517391 PLA2G4EQ3MJ16 856 aa9.12□□□□□ -0.95
CPNE3-202ENST00000517391 RAB15P59190 212 aa9.11□□□□□ -0.95
CPNE3-202ENST00000517391 CCDC116Q8IYX3 515 aa9.11□□□□□ -0.95
CPNE3-202ENST00000517391 SFI1A8K8P3 1242 aa9.1□□□□□ -0.95
CPNE3-202ENST00000517391 PTSQ03393 145 aa9.1□□□□□ -0.95
CPNE3-202ENST00000517391 INTS6LQ5JSJ4 861 aaKnown RBP9.1□□□□□ -0.95
CPNE3-202ENST00000517391 AMOTL2Q9Y2J4 779 aa9.1□□□□□ -0.95
CPNE3-202ENST00000517391 DHX9Q08211 1270 aaKnown RBP9.09□□□□□ -0.95
CPNE3-202ENST00000517391 PPP1R26Q5T8A7 1209 aaPredicted RBP9.09□□□□□ -0.95
CPNE3-202ENST00000517391 Q8N3U1 123 aa9.09□□□□□ -0.95
CPNE3-202ENST00000517391 MEIOBQ8N635 442 aa9.09□□□□□ -0.95
CPNE3-202ENST00000517391 HINFPQ9BQA5 517 aa9.09□□□□□ -0.95
CPNE3-202ENST00000517391 CXXC1Q9P0U4 656 aaPredicted RBP9.09□□□□□ -0.95
CPNE3-202ENST00000517391 ERVH48-1M5A8F1 160 aa9.08□□□□□ -0.96
CPNE3-202ENST00000517391 PRMT3O60678 531 aa9.08□□□□□ -0.96
CPNE3-202ENST00000517391 MAP3K10Q02779 954 aa9.08□□□□□ -0.96
CPNE3-202ENST00000517391 CC2D2BQ6DHV5 1058 aa9.08□□□□□ -0.96
CPNE3-202ENST00000517391 TAS1R3Q7RTX0 852 aa9.08□□□□□ -0.96
CPNE3-202ENST00000517391 GALNT6Q8NCL4 622 aa9.08□□□□□ -0.96
CPNE3-202ENST00000517391 EMILIN1Q9Y6C2 1016 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms