RNA–Protein interactions for RNA: ENST00000517391.5

CPNE3-202, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 785 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-202ENST00000517391 AEBP2Q6ZN18 517 aaPredicted RBP28.64■■■□□ 2.18
CPNE3-202ENST00000517391 CHIC1Q5VXU3 224 aa26.88■■□□□ 1.89
CPNE3-202ENST00000517391 SENP3Q9H4L4 574 aaPredicted RBP24.67■■□□□ 1.54
CPNE3-202ENST00000517391 PHF23Q9BUL5 403 aaPredicted RBP24.19■■□□□ 1.46
CPNE3-202ENST00000517391 FOXD1Q16676 465 aa23■■□□□ 1.27
CPNE3-202ENST00000517391 POTEDQ86YR6 584 aa22.56■■□□□ 1.2
CPNE3-202ENST00000517391 MSH5O43196 834 aa21.91■■□□□ 1.1
CPNE3-202ENST00000517391 PIAS4Q8N2W9 510 aaPredicted RBP21.35■■□□□ 1.01
CPNE3-202ENST00000517391 PLPPR3Q6T4P5 718 aa20.92■□□□□ 0.94
CPNE3-202ENST00000517391 PPP6R1Q9UPN7 881 aa20.9■□□□□ 0.94
CPNE3-202ENST00000517391 ADRA2BP18089 450 aa20.8■□□□□ 0.92
CPNE3-202ENST00000517391 DMRT2Q9Y5R5 561 aa19.41■□□□□ 0.7
CPNE3-202ENST00000517391 MAPK8IP2Q13387 824 aaPredicted RBP19.32■□□□□ 0.68
CPNE3-202ENST00000517391 CACNB1Q02641 598 aaPredicted RBP19.22■□□□□ 0.67
CPNE3-202ENST00000517391 SCAF1Q9H7N4 1312 aaKnown RBP19.18■□□□□ 0.66
CPNE3-202ENST00000517391 DCAF8L1A6NGE4 600 aa18.65■□□□□ 0.58
CPNE3-202ENST00000517391 RNF39Q9H2S5 420 aa18.57■□□□□ 0.56
CPNE3-202ENST00000517391 HOXD11P31277 338 aaPredicted RBP18.41■□□□□ 0.54
CPNE3-202ENST00000517391 C1QBPQ07021 282 aaKnown RBP18.31■□□□□ 0.52
CPNE3-202ENST00000517391 PPP4R3CPQ6ZMV5 832 aa18.2■□□□□ 0.5
CPNE3-202ENST00000517391 RNF216Q9NWF9 866 aaPredicted RBP18.09■□□□□ 0.49
CPNE3-202ENST00000517391 CNKSR2Q8WXI2 1034 aa18.07■□□□□ 0.48
CPNE3-202ENST00000517391 DNAJC5BQ9UF47 199 aa18■□□□□ 0.47
CPNE3-202ENST00000517391 POTEHQ6S545 545 aa17.56■□□□□ 0.4
CPNE3-202ENST00000517391 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.4
CPNE3-202ENST00000517391 NCBP3Q53F19 620 aaKnown RBP17.35■□□□□ 0.37
CPNE3-202ENST00000517391 DSG3P32926 999 aa17.13■□□□□ 0.33
CPNE3-202ENST00000517391 CAPN15O75808 1086 aa17.07■□□□□ 0.32
CPNE3-202ENST00000517391 U3KPZ7 1027 aaPredicted RBP17.05■□□□□ 0.32
CPNE3-202ENST00000517391 NPM3O75607 178 aaKnown RBP17.01■□□□□ 0.31
CPNE3-202ENST00000517391 SPINK5Q9NQ38 1064 aaPredicted RBP17.01■□□□□ 0.31
CPNE3-202ENST00000517391 APLP2Q06481 763 aa16.65■□□□□ 0.26
CPNE3-202ENST00000517391 TRHP20396 242 aaPredicted RBP16.62■□□□□ 0.25
CPNE3-202ENST00000517391 ZNF219Q9P2Y4 722 aaPredicted RBP16.61■□□□□ 0.25
CPNE3-202ENST00000517391 ABCB7O75027 752 aa16.57■□□□□ 0.24
CPNE3-202ENST00000517391 KCNA4P22459 653 aa16.56■□□□□ 0.24
CPNE3-202ENST00000517391 RBM42Q9BTD8 480 aaKnown RBP16.45■□□□□ 0.22
CPNE3-202ENST00000517391 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.43■□□□□ 0.22
CPNE3-202ENST00000517391 HNRNPUL2Q1KMD3 747 aaKnown RBP16.43■□□□□ 0.22
CPNE3-202ENST00000517391 SLC4A2P04920 1241 aa16.41■□□□□ 0.22
CPNE3-202ENST00000517391 CHRDL2Q6WN34 429 aa16.32■□□□□ 0.2
CPNE3-202ENST00000517391 SAMD1Q6SPF0 538 aaPredicted RBP16.27■□□□□ 0.2
CPNE3-202ENST00000517391 SP7Q8TDD2 431 aaPredicted RBP16.12■□□□□ 0.17
CPNE3-202ENST00000517391 POLA2Q14181 598 aa16■□□□□ 0.15
CPNE3-202ENST00000517391 AKT1S1Q96B36 256 aa15.88■□□□□ 0.13
CPNE3-202ENST00000517391 EHMT2Q96KQ7 1210 aa15.83■□□□□ 0.12
CPNE3-202ENST00000517391 MYCNP04198 464 aaPredicted RBP15.8■□□□□ 0.12
CPNE3-202ENST00000517391 PIP4P2Q8N4L2 257 aa15.75■□□□□ 0.11
CPNE3-202ENST00000517391 SLC4A1APQ9BWU0 796 aaKnown RBP15.73■□□□□ 0.11
CPNE3-202ENST00000517391 HAX1O00165 279 aa15.71■□□□□ 0.11
CPNE3-202ENST00000517391 REM2Q8IYK8 340 aaPredicted RBP15.7■□□□□ 0.1
CPNE3-202ENST00000517391 ZBTB12Q9Y330 459 aaPredicted RBP15.7■□□□□ 0.1
CPNE3-202ENST00000517391 FXR2P51116 673 aaKnown RBP eCLIP15.56■□□□□ 0.08
CPNE3-202ENST00000517391 PITPNM1O00562 1244 aa15.52■□□□□ 0.08
CPNE3-202ENST00000517391 OSCARQ8IYS5 282 aa15.49■□□□□ 0.07
CPNE3-202ENST00000517391 CSRNP3Q8WYN3 585 aa15.41■□□□□ 0.06
CPNE3-202ENST00000517391 ATF5Q9Y2D1 282 aaPredicted RBP15.39■□□□□ 0.05
CPNE3-202ENST00000517391 EVX2Q03828 476 aa15.36■□□□□ 0.05
CPNE3-202ENST00000517391 FOXD4L1Q9NU39 408 aa15.25■□□□□ 0.03
CPNE3-202ENST00000517391 ZBTB22O15209 634 aa15.23■□□□□ 0.03
CPNE3-202ENST00000517391 PRKAR2AP13861 404 aaKnown RBP15.14■□□□□ 0.01
CPNE3-202ENST00000517391 LHX8Q68G74 356 aa15.12■□□□□ 0.01
CPNE3-202ENST00000517391 SPDYE2BA6NHP3 402 aa15.11■□□□□ 0.01
CPNE3-202ENST00000517391 SPDYE6P0CI01 402 aa15.11■□□□□ 0.01
CPNE3-202ENST00000517391 SPDYE2Q495Y8 402 aa15.11■□□□□ 0.01
CPNE3-202ENST00000517391 C19orf67A6NJJ6 358 aa15.09■□□□□ 0.01
CPNE3-202ENST00000517391 GABBR2O75899 941 aa15.04■□□□□ -0
CPNE3-202ENST00000517391 SPDYE1Q8NFV5 336 aaPredicted RBP15.04■□□□□ -0
CPNE3-202ENST00000517391 CLEC11AQ9Y240 323 aa15.02■□□□□ -0
CPNE3-202ENST00000517391 FBLN2P98095 1184 aa14.97□□□□□ -0.01
CPNE3-202ENST00000517391 ATXN8OSP0DMR3 200 aa14.87□□□□□ -0.03
CPNE3-202ENST00000517391 ZNF692Q9BU19 519 aaPredicted RBP14.8□□□□□ -0.04
CPNE3-202ENST00000517391 SSUH2Q9Y2M2 353 aa14.79□□□□□ -0.04
CPNE3-202ENST00000517391 CHADLQ6NUI6 762 aa14.76□□□□□ -0.05
CPNE3-202ENST00000517391 PLSCR2Q9NRY7 297 aa14.76□□□□□ -0.05
CPNE3-202ENST00000517391 PRR29P0C7W0 189 aa14.69□□□□□ -0.06
CPNE3-202ENST00000517391 POTEIP0CG38 1075 aa14.67□□□□□ -0.06
CPNE3-202ENST00000517391 CLCN6P51797 869 aa14.67□□□□□ -0.06
CPNE3-202ENST00000517391 MKRN4PQ13434 485 aaPredicted RBP14.66□□□□□ -0.06
CPNE3-202ENST00000517391 CD44P16070 742 aaKnown RBP14.61□□□□□ -0.07
CPNE3-202ENST00000517391 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
CPNE3-202ENST00000517391 DCBLD2Q96PD2 775 aa14.53□□□□□ -0.08
CPNE3-202ENST00000517391 FARP1Q9Y4F1 1045 aaPredicted RBP14.51□□□□□ -0.09
CPNE3-202ENST00000517391 ZNF579Q8NAF0 562 aaKnown RBP14.36□□□□□ -0.11
CPNE3-202ENST00000517391 OTUD5Q96G74 571 aa14.29□□□□□ -0.12
CPNE3-202ENST00000517391 ZRANB1Q9UGI0 708 aa14.29□□□□□ -0.12
CPNE3-202ENST00000517391 POTEMA6NI47 508 aa14.26□□□□□ -0.13
CPNE3-202ENST00000517391 GALR2O43603 387 aaPredicted RBP14.19□□□□□ -0.14
CPNE3-202ENST00000517391 POTEGQ6S5H5 508 aa14.19□□□□□ -0.14
CPNE3-202ENST00000517391 PCDH10Q9P2E7 1040 aa14.17□□□□□ -0.14
CPNE3-202ENST00000517391 POTEB2H3BUK9 544 aa14.16□□□□□ -0.14
CPNE3-202ENST00000517391 PAK3O75914 559 aaPredicted RBP14.09□□□□□ -0.15
CPNE3-202ENST00000517391 CREBZFQ9NS37 354 aa14.09□□□□□ -0.15
CPNE3-202ENST00000517391 STAG3Q9UJ98 1225 aa14.06□□□□□ -0.16
CPNE3-202ENST00000517391 PHF12Q96QT6 1004 aa13.98□□□□□ -0.17
CPNE3-202ENST00000517391 PELP1Q8IZL8 1130 aaKnown RBP13.96□□□□□ -0.17
CPNE3-202ENST00000517391 MAMSTRQ6ZN01 415 aa13.94□□□□□ -0.18
CPNE3-202ENST00000517391 METRNQ9UJH8 293 aa13.92□□□□□ -0.18
CPNE3-202ENST00000517391 NPM1P06748 294 aaKnown RBP eCLIP13.91□□□□□ -0.18
CPNE3-202ENST00000517391 C7P10643 843 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms