RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KLHL40Q2TBA0 621 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC30Q5VVM6 783 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 TSG101Q99816 390 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 PDRG1Q9NUG6 133 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 C11orf95C9JLR9 678 aaPredicted RBP13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 ATP2B1P20020 1258 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 HLTFQ14527 1009 aaKnown RBP eCLIP13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 SOGA3Q5TF21 947 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 EID1Q9Y6B2 187 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 SCAPERQ9BY12 1400 aa13.02□□□□□ -0.33
LIMCH1-217ENST00000512946 FOXD1Q16676 465 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 NEUROD6Q96NK8 337 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 IBSPP21815 317 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 UBE4AQ14139 1066 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 GRIPAP1Q4V328 841 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 LARP1Q6PKG0 1096 aaKnown RBP13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 CTCFLQ8NI51 663 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 NEBLO76041 1014 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 CAPN2P17655 700 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 LACTBP83111 547 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC158Q5M9N0 1113 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 MAATS1Q7Z4T9 603 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 C16orf45Q96MC5 204 aaPredicted RBP13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 HOMER2Q9NSB8 354 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 TSPYL4Q9UJ04 414 aa13.01□□□□□ -0.33
LIMCH1-217ENST00000512946 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13□□□□□ -0.33
LIMCH1-217ENST00000512946 IFT74Q96LB3 600 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 RAI14Q9P0K7 980 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 FEZ2Q9UHY8 353 aaPredicted RBP13□□□□□ -0.33
LIMCH1-217ENST00000512946 ANAPC4Q9UJX5 808 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 SLU7O95391 586 aaKnown RBP13□□□□□ -0.33
LIMCH1-217ENST00000512946 MAP4K4O95819 1239 aaPredicted RBP13□□□□□ -0.33
LIMCH1-217ENST00000512946 STX1AQ16623 288 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 CACNA2D4Q7Z3S7 1137 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 CTAGE15A4D2H0 777 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 CTAGE8P0CG41 777 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 EIF2S2P20042 333 aaKnown RBP13□□□□□ -0.33
LIMCH1-217ENST00000512946 PIP4K2BP78356 416 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 CTAGE6Q86UF2 777 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 CTAGE4Q8IX94 777 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 CEBPZQ03701 1054 aaKnown RBP13□□□□□ -0.33
LIMCH1-217ENST00000512946 TCHPQ9BT92 498 aa13□□□□□ -0.33
LIMCH1-217ENST00000512946 GGT6Q6P531 493 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 NUP133Q8WUM0 1156 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC69A6NI79 296 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC178Q5BJE1 867 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC18Q5T9S5 1454 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 MAP3K9P80192 1104 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 RPAP2Q8IXW5 612 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 TMEM132AQ24JP5 1023 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 KANK4Q5T7N3 995 aaPredicted RBP12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 KANK3Q6NY19 840 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 CEP57Q86XR8 500 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 CACNA2D3Q8IZS8 1091 aa12.99□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC160A6NGH7 325 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 PRPHP41219 470 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 CHD1LQ86WJ1 897 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 WDR63Q8IWG1 891 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 DHX37Q8IY37 1157 aaKnown RBP12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC114Q96M63 670 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 ZKSCAN5Q9Y2L8 839 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 ZBTB17Q13105 803 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 TSNARE1Q96NA8 513 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 GOPCQ9HD26 462 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 TUBB2AQ13885 445 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 TUBB2BQ9BVA1 445 aa12.98□□□□□ -0.33
LIMCH1-217ENST00000512946 NOLC1Q14978 699 aaKnown RBP eCLIP12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 RIC3Q7Z5B4 369 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 FERMT1Q9BQL6 677 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 VCXQ9H320 206 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 SUDS3Q9H7L9 328 aaPredicted RBP12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 ADCY5O95622 1261 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 NAA25Q14CX7 972 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 GNL3LQ9NVN8 582 aaKnown RBP12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 HYPKQ9NX55 129 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 ATRIPQ8WXE1 791 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 USP25Q9UHP3 1055 aa12.97□□□□□ -0.33
LIMCH1-217ENST00000512946 SPDYE4A6NLX3 237 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 MPHOSPH10O00566 681 aaKnown RBP12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC172P0C7W6 258 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC129Q6ZRS4 1044 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 GOLGA1Q92805 767 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 IKBKGQ9Y6K9 419 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 CCDC196A0A1B0GTZ2 297 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 C10orf67Q8IYJ2 551 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 MPNDQ8N594 471 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 RASAL2Q9UJF2 1139 aa12.96□□□□□ -0.33
LIMCH1-217ENST00000512946 GNG11P61952 73 aa12.96□□□□□ -0.34
LIMCH1-217ENST00000512946 SPAG1Q07617 926 aa12.96□□□□□ -0.34
LIMCH1-217ENST00000512946 CETN1Q12798 172 aa12.96□□□□□ -0.34
LIMCH1-217ENST00000512946 SETDB1Q15047 1291 aa12.96□□□□□ -0.34
LIMCH1-217ENST00000512946 RAB34Q9BZG1 259 aa12.96□□□□□ -0.34
LIMCH1-217ENST00000512946 MKRN1Q9UHC7 482 aaKnown RBP12.96□□□□□ -0.34
LIMCH1-217ENST00000512946 ARHGAP25P42331 645 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 MVPQ14764 893 aaKnown RBP12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 CROCCP2Q86T23 111 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 VCX3BQ9H321 246 aa12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 CCDC12Q8WUD4 166 aaPredicted RBP12.95□□□□□ -0.34
LIMCH1-217ENST00000512946 NACADO15069 1562 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms