RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 TRIML1Q8N9V2 468 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 PPP1R14CQ8TAE6 165 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 SALL2Q9Y467 1007 aaPredicted RBP6.76□□□□□ -1.33
USF3-204ENST00000496826 IRX4P78413 519 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 CCDC83Q8IWF9 413 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 KIF6Q6ZMV9 814 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 ARHGAP24Q8N264 748 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 WHAMMQ8TF30 809 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 STIM2Q9P246 746 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 PPP1R9AQ9ULJ8 1098 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 ERCC5P28715 1186 aaPredicted RBP6.76□□□□□ -1.33
USF3-204ENST00000496826 INAQ16352 499 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.76□□□□□ -1.33
USF3-204ENST00000496826 IFT57Q9NWB7 429 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 MKL2Q9ULH7 1088 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 NUCB1Q02818 461 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 ZBTB16Q05516 673 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 CC2D1BQ5T0F9 858 aaKnown RBP6.76□□□□□ -1.33
USF3-204ENST00000496826 USP37Q86T82 979 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 FSD1Q9BTV5 496 aa6.76□□□□□ -1.33
USF3-204ENST00000496826 KTN1Q86UP2 1357 aaKnown RBP6.76□□□□□ -1.33
USF3-204ENST00000496826 TRIM6-TRIM34B2RNG4 842 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 PODNQ7Z5L7 613 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 PALM2Q8IXS6 379 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 FBF1Q8TES7 1133 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 IFT81Q8WYA0 676 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 JAKMIP2Q96AA8 810 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 SATB2Q9UPW6 733 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 ERICH4A6NGS2 130 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 SNTNA6NMZ2 147 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 PDCP20941 246 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 SF3B2Q13435 895 aaKnown RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 HDGFL2Q7Z4V5 671 aaPredicted RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 POTEDQ86YR6 584 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 FMNL3Q8IVF7 1028 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 PDCD7Q8N8D1 485 aaKnown RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 WDR46O15213 610 aaKnown RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 GFAPP14136 432 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 FLOT2Q14254 428 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 CCDC178Q5BJE1 867 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 ZNF592Q92610 1267 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 RALYLQ86SE5 291 aaKnown RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 CWC25Q9NXE8 425 aaPredicted RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 HSF2BPO75031 334 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 ST13P50502 369 aaKnown RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 IQCA1Q86XH1 822 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 SPC24Q8NBT2 197 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 NUF2Q9BZD4 464 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 PPP1R12CQ9BZL4 782 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 SYNCQ9H7C4 482 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 MNAT1P51948 309 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 RAB3GAP1Q15042 981 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 SRGAP1Q7Z6B7 1085 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 TMTC1Q8IUR5 882 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 CCDC138Q96M89 665 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 TDO2P48775 406 aa6.75□□□□□ -1.33
USF3-204ENST00000496826 RNF187Q5TA31 235 aaPredicted RBP6.75□□□□□ -1.33
USF3-204ENST00000496826 GSTTP1A0A1W2PQM5 241 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 TUBB4BP68371 445 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 CDR2Q01850 454 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 APOBRQ0VD83 1088 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 CCDC124Q96CT7 223 aaKnown RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 EHBP1Q8NDI1 1231 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 GFM2Q969S9 779 aaKnown RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 CRACR2AQ9BSW2 395 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 PHLDB1Q86UU1 1377 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 PRPHP41219 470 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 PPFIBP1Q86W92 1011 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 ANKS4BQ8N8V4 417 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 PUS7Q96PZ0 661 aaKnown RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 RAB11FIP3O75154 756 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 RFC1P35251 1148 aaPredicted RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 CCDC57Q2TAC2 916 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 TEX12Q9BXU0 123 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 TAF11Q15544 211 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 IFI16Q16666 785 aaKnown RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 LARP1Q6PKG0 1096 aaKnown RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 CCT6BQ92526 530 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 HDAC9Q9UKV0 1011 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 EVCP57679 992 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 IKQ13123 557 aaPredicted RBP6.74□□□□□ -1.33
USF3-204ENST00000496826 NFXL1Q6ZNB6 911 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 CPLX3Q8WVH0 158 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 ATP6V0A4Q9HBG4 840 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 TACC3Q9Y6A5 838 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 SPECC1L-ADORA2AF8WAN1 911 aa6.74□□□□□ -1.33
USF3-204ENST00000496826 ZNF569Q5MCW4 686 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 STXBP4Q6ZWJ1 553 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 MMRN2Q9H8L6 949 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 TEKT2Q9UIF3 430 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 TMCO5AQ8N6Q1 288 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 TSPYL2Q9H2G4 693 aaPredicted RBP6.73□□□□□ -1.33
USF3-204ENST00000496826 ANKFY1Q9P2R3 1169 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 RAD21O60216 631 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 HSPA8P11142 646 aaKnown RBP6.73□□□□□ -1.33
USF3-204ENST00000496826 SKILP12757 684 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 ZNF131P52739 623 aa6.73□□□□□ -1.33
USF3-204ENST00000496826 UTP14CQ5TAP6 766 aaKnown RBP6.73□□□□□ -1.33
USF3-204ENST00000496826 CCDC84Q86UT8 332 aaPredicted RBP6.73□□□□□ -1.33
USF3-204ENST00000496826 NECAB1Q8N987 351 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms