RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 CSB-PGBD3P0DP91 1061 aa10.17□□□□□ -0.78
SMC4-223ENST00000493695 PGBD3Q8N328 593 aa10.17□□□□□ -0.78
SMC4-223ENST00000493695 DOLKQ9UPQ8 538 aa10.17□□□□□ -0.78
SMC4-223ENST00000493695 PHF20L1A8MW92 1017 aa10.16□□□□□ -0.78
SMC4-223ENST00000493695 OXLD1Q5BKU9 147 aa10.16□□□□□ -0.78
SMC4-223ENST00000493695 ESCO1Q5FWF5 840 aa10.16□□□□□ -0.78
SMC4-223ENST00000493695 WDR44Q5JSH3 913 aa10.16□□□□□ -0.78
SMC4-223ENST00000493695 ACDQ96AP0 544 aa10.16□□□□□ -0.78
SMC4-223ENST00000493695 SOCS7O14512 581 aa10.15□□□□□ -0.78
SMC4-223ENST00000493695 BEND7Q8N7W2 519 aaPredicted RBP10.15□□□□□ -0.78
SMC4-223ENST00000493695 USP4Q13107 963 aa10.14□□□□□ -0.79
SMC4-223ENST00000493695 RNF135Q8IUD6 432 aa10.14□□□□□ -0.79
SMC4-223ENST00000493695 RUBCNLQ9H714 662 aa10.14□□□□□ -0.79
SMC4-223ENST00000493695 PHF24Q9UPV7 400 aa10.14□□□□□ -0.79
SMC4-223ENST00000493695 A0A1B0GTH6 734 aa10.13□□□□□ -0.79
SMC4-223ENST00000493695 TSGA10IPQ3SY00 556 aa10.13□□□□□ -0.79
SMC4-223ENST00000493695 STAU1O95793 577 aaKnown RBP10.12□□□□□ -0.79
SMC4-223ENST00000493695 IGHA1P01876 353 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 ABL2P42684 1182 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 FOXK2Q01167 660 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 VAC14Q08AM6 782 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 TLR1Q15399 786 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 XAGE2Q96GT9 111 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 OXCT2Q9BYC2 517 aaPredicted RBP10.11□□□□□ -0.79
SMC4-223ENST00000493695 RRAGCQ9HB90 399 aa10.11□□□□□ -0.79
SMC4-223ENST00000493695 MAP2K3P46734 347 aa10.1□□□□□ -0.79
SMC4-223ENST00000493695 C4orf17Q53FE4 359 aa10.1□□□□□ -0.79
SMC4-223ENST00000493695 EFHC2Q5JST6 749 aa10.1□□□□□ -0.79
SMC4-223ENST00000493695 SIRT1Q96EB6 747 aa10.1□□□□□ -0.79
SMC4-223ENST00000493695 AIDAQ96BJ3 306 aa10.09□□□□□ -0.79
SMC4-223ENST00000493695 CFHR5Q9BXR6 569 aa10.09□□□□□ -0.79
SMC4-223ENST00000493695 AMPD1P23109 780 aa10.08□□□□□ -0.8
SMC4-223ENST00000493695 MSX1P28360 303 aa10.08□□□□□ -0.8
SMC4-223ENST00000493695 GALNT6Q8NCL4 622 aa10.08□□□□□ -0.8
SMC4-223ENST00000493695 RHBDD1Q8TEB9 315 aa10.08□□□□□ -0.8
SMC4-223ENST00000493695 ETNK1Q9HBU6 452 aa10.08□□□□□ -0.8
SMC4-223ENST00000493695 GDPD2Q9HCC8 539 aa10.08□□□□□ -0.8
SMC4-223ENST00000493695 OIP5O43482 229 aa10.07□□□□□ -0.8
SMC4-223ENST00000493695 BMP4P12644 408 aa10.07□□□□□ -0.8
SMC4-223ENST00000493695 PLA2G4AP47712 749 aa10.07□□□□□ -0.8
SMC4-223ENST00000493695 SEMA3FQ13275 785 aa10.06□□□□□ -0.8
SMC4-223ENST00000493695 KLRG1Q96E93 195 aa10.06□□□□□ -0.8
SMC4-223ENST00000493695 ABHD17AQ96GS6 310 aa10.06□□□□□ -0.8
SMC4-223ENST00000493695 DCAF5Q96JK2 942 aa10.06□□□□□ -0.8
SMC4-223ENST00000493695 FHDC1Q9C0D6 1143 aaPredicted RBP10.06□□□□□ -0.8
SMC4-223ENST00000493695 MSTNO14793 375 aa10.05□□□□□ -0.8
SMC4-223ENST00000493695 IRF5Q13568 498 aa10.05□□□□□ -0.8
SMC4-223ENST00000493695 TBC1D9Q6ZT07 1266 aa10.05□□□□□ -0.8
SMC4-223ENST00000493695 HRH3Q9Y5N1 445 aa10.05□□□□□ -0.8
SMC4-223ENST00000493695 THBS1P07996 1170 aa10.04□□□□□ -0.8
SMC4-223ENST00000493695 PLA2G4EQ3MJ16 856 aa10.04□□□□□ -0.8
SMC4-223ENST00000493695 LOC100996750A0A140TA64 210 aa10.03□□□□□ -0.8
SMC4-223ENST00000493695 GDF10P55107 478 aa10.03□□□□□ -0.8
SMC4-223ENST00000493695 LBRQ14739 615 aaKnown RBP10.03□□□□□ -0.8
SMC4-223ENST00000493695 PPARGC1BQ86YN6 1023 aaKnown RBP10.03□□□□□ -0.8
SMC4-223ENST00000493695 PHTF2Q8N3S3 785 aa10.03□□□□□ -0.8
SMC4-223ENST00000493695 KRTAP4-6Q9BYQ5 205 aa10.03□□□□□ -0.8
SMC4-223ENST00000493695 LRRC4BQ9NT99 713 aa10.03□□□□□ -0.8
SMC4-223ENST00000493695 SERTAD1Q9UHV2 236 aa10.03□□□□□ -0.8
SMC4-223ENST00000493695 GDF2Q9UK05 429 aaPredicted RBP10.03□□□□□ -0.8
SMC4-223ENST00000493695 ATXN7L1Q9ULK2 861 aaPredicted RBP10.03□□□□□ -0.8
SMC4-223ENST00000493695 FGFR3P22607 806 aa10.02□□□□□ -0.81
SMC4-223ENST00000493695 SNRPNP63162 240 aaKnown RBP10.02□□□□□ -0.81
SMC4-223ENST00000493695 EDARADDQ8WWZ3 215 aa10.02□□□□□ -0.81
SMC4-223ENST00000493695 MKL2Q9ULH7 1088 aa10.02□□□□□ -0.81
SMC4-223ENST00000493695 SHISA8B8ZZ34 492 aa10.01□□□□□ -0.81
SMC4-223ENST00000493695 WASHC4Q2M389 1173 aa10.01□□□□□ -0.81
SMC4-223ENST00000493695 ARSJQ5FYB0 599 aaPredicted RBP10.01□□□□□ -0.81
SMC4-223ENST00000493695 GOLGA6L1Q8N7Z2 621 aa10.01□□□□□ -0.81
SMC4-223ENST00000493695 PLPP7Q8NBV4 271 aa10.01□□□□□ -0.81
SMC4-223ENST00000493695 BNIP3LO60238 219 aa10□□□□□ -0.81
SMC4-223ENST00000493695 INHAP05111 366 aa10□□□□□ -0.81
SMC4-223ENST00000493695 NIFKQ9BYG3 293 aaKnown RBP10□□□□□ -0.81
SMC4-223ENST00000493695 CTBSQ01459 385 aa9.99□□□□□ -0.81
SMC4-223ENST00000493695 FIGNL1Q6PIW4 674 aa9.99□□□□□ -0.81
SMC4-223ENST00000493695 SPOCK3Q9BQ16 436 aa9.99□□□□□ -0.81
SMC4-223ENST00000493695 GGA1Q9UJY5 639 aa9.99□□□□□ -0.81
SMC4-223ENST00000493695 MAP7D1Q3KQU3 841 aa9.98□□□□□ -0.81
SMC4-223ENST00000493695 C1orf229Q6ZS94 237 aaPredicted RBP9.98□□□□□ -0.81
SMC4-223ENST00000493695 GJA3Q9Y6H8 435 aa9.98□□□□□ -0.81
SMC4-223ENST00000493695 SCNN1DP51172 638 aa9.97□□□□□ -0.81
SMC4-223ENST00000493695 GRIN2CQ14957 1233 aa9.97□□□□□ -0.81
SMC4-223ENST00000493695 NBPF1Q3BBV0 1214 aa9.97□□□□□ -0.81
SMC4-223ENST00000493695 CABP1Q9NZU7 370 aa9.97□□□□□ -0.81
SMC4-223ENST00000493695 DCDC2BA2VCK2 349 aa9.96□□□□□ -0.82
SMC4-223ENST00000493695 C2CD2LO14523 706 aa9.96□□□□□ -0.82
SMC4-223ENST00000493695 SMTNP53814 917 aa9.96□□□□□ -0.82
SMC4-223ENST00000493695 PSME1Q06323 249 aa9.96□□□□□ -0.82
SMC4-223ENST00000493695 UBAP2LQ14157 1087 aaKnown RBP9.96□□□□□ -0.82
SMC4-223ENST00000493695 ZCCHC2Q9C0B9 1178 aaKnown RBP9.96□□□□□ -0.82
SMC4-223ENST00000493695 CRISPLD1Q9H336 500 aa9.96□□□□□ -0.82
SMC4-223ENST00000493695 PCDHGC4Q9Y5F7 938 aa9.96□□□□□ -0.82
SMC4-223ENST00000493695 NEURL1BA8MQ27 555 aa9.95□□□□□ -0.82
SMC4-223ENST00000493695 ATXN7O15265 892 aaPredicted RBP9.95□□□□□ -0.82
SMC4-223ENST00000493695 TATP17735 454 aaPredicted RBP9.95□□□□□ -0.82
SMC4-223ENST00000493695 KHNYNO15037 678 aaKnown RBP9.94□□□□□ -0.82
SMC4-223ENST00000493695 BICDL1Q6ZP65 573 aa9.94□□□□□ -0.82
SMC4-223ENST00000493695 A0A1W2PNR3 127 aa9.93□□□□□ -0.82
SMC4-223ENST00000493695 SKIP12755 728 aa9.93□□□□□ -0.82
SMC4-223ENST00000493695 SOX11P35716 441 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms