RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 ASAP1Q9ULH1 1129 aa16.97■□□□□ 0.31
GPNMB-214ENST00000492858 ITGB4P16144 1822 aa16.97■□□□□ 0.31
GPNMB-214ENST00000492858 N4BP2Q86UW6 1770 aaPredicted RBP16.97■□□□□ 0.31
GPNMB-214ENST00000492858 MAP2P11137 1827 aaKnown RBP16.96■□□□□ 0.31
GPNMB-214ENST00000492858 FYB1O15117 783 aa16.96■□□□□ 0.31
GPNMB-214ENST00000492858 NKX1-1Q15270 411 aaPredicted RBP16.96■□□□□ 0.31
GPNMB-214ENST00000492858 TMOD3Q9NYL9 352 aa16.96■□□□□ 0.31
GPNMB-214ENST00000492858 PLEKHG2Q9H7P9 1386 aa16.96■□□□□ 0.31
GPNMB-214ENST00000492858 FLT4P35916 1363 aa16.95■□□□□ 0.3
GPNMB-214ENST00000492858 TMF1P82094 1093 aa16.95■□□□□ 0.3
GPNMB-214ENST00000492858 NLGN1Q8N2Q7 840 aa16.95■□□□□ 0.3
GPNMB-214ENST00000492858 CCDC87Q9NVE4 849 aa16.95■□□□□ 0.3
GPNMB-214ENST00000492858 KIF13BQ9NQT8 1826 aa16.95■□□□□ 0.3
GPNMB-214ENST00000492858 KDM2BQ8NHM5 1336 aa16.95■□□□□ 0.3
GPNMB-214ENST00000492858 TESK2Q96S53 571 aa16.94■□□□□ 0.3
GPNMB-214ENST00000492858 RTCBQ9Y3I0 505 aaKnown RBP16.94■□□□□ 0.3
GPNMB-214ENST00000492858 KCPQ6ZWJ8 1503 aa16.94■□□□□ 0.3
GPNMB-214ENST00000492858 TRAPPC3LQ5T215 181 aa16.93■□□□□ 0.3
GPNMB-214ENST00000492858 SPG7Q9UQ90 795 aa16.93■□□□□ 0.3
GPNMB-214ENST00000492858 PKD1L3Q7Z443 1732 aa16.93■□□□□ 0.3
GPNMB-214ENST00000492858 RRAGCQ9HB90 399 aa16.92■□□□□ 0.3
GPNMB-214ENST00000492858 RNF181Q9P0P0 153 aa16.92■□□□□ 0.3
GPNMB-214ENST00000492858 PARP3Q9Y6F1 533 aa16.92■□□□□ 0.3
GPNMB-214ENST00000492858 KIF24Q5T7B8 1368 aa16.91■□□□□ 0.3
GPNMB-214ENST00000492858 KCNA3P22001 575 aa16.91■□□□□ 0.3
GPNMB-214ENST00000492858 ATG3Q9NT62 314 aa16.91■□□□□ 0.3
GPNMB-214ENST00000492858 ST20-MTHFSA0A0A6YYL1 179 aa16.9■□□□□ 0.3
GPNMB-214ENST00000492858 GYS1P13807 737 aa16.9■□□□□ 0.3
GPNMB-214ENST00000492858 ARHGEF1Q92888 912 aaKnown RBP16.9■□□□□ 0.3
GPNMB-214ENST00000492858 SMC1BQ8NDV3 1235 aa16.89■□□□□ 0.29
GPNMB-214ENST00000492858 DCAF5Q96JK2 942 aa16.89■□□□□ 0.29
GPNMB-214ENST00000492858 PIM2Q9P1W9 311 aa16.89■□□□□ 0.29
GPNMB-214ENST00000492858 EMILIN1Q9Y6C2 1016 aa16.89■□□□□ 0.29
GPNMB-214ENST00000492858 NCAPD2Q15021 1401 aa16.88■□□□□ 0.29
GPNMB-214ENST00000492858 C4AP0C0L4 1744 aa16.88■□□□□ 0.29
GPNMB-214ENST00000492858 HSPA1AP0DMV8 641 aaKnown RBP16.88■□□□□ 0.29
GPNMB-214ENST00000492858 HSPA1BP0DMV9 641 aaKnown RBP16.88■□□□□ 0.29
GPNMB-214ENST00000492858 ADRA2BP18089 450 aa16.88■□□□□ 0.29
GPNMB-214ENST00000492858 RFC4P35249 363 aa16.88■□□□□ 0.29
GPNMB-214ENST00000492858 DALRD3Q5D0E6 543 aaKnown RBP16.88■□□□□ 0.29
GPNMB-214ENST00000492858 KDRP35968 1356 aa16.88■□□□□ 0.29
GPNMB-214ENST00000492858 PHKG2P15735 406 aa16.87■□□□□ 0.29
GPNMB-214ENST00000492858 IFNL2Q8IZJ0 200 aa16.87■□□□□ 0.29
GPNMB-214ENST00000492858 SLC4A9Q96Q91 983 aa16.87■□□□□ 0.29
GPNMB-214ENST00000492858 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.87■□□□□ 0.29
GPNMB-214ENST00000492858 BRCA1P38398 1863 aaKnown RBP16.86■□□□□ 0.29
GPNMB-214ENST00000492858 PPM1GO15355 546 aaPredicted RBP16.86■□□□□ 0.29
GPNMB-214ENST00000492858 SLC24A1O60721 1099 aa16.86■□□□□ 0.29
GPNMB-214ENST00000492858 RC3H1Q5TC82 1133 aaKnown RBP16.86■□□□□ 0.29
GPNMB-214ENST00000492858 RBM42Q9BTD8 480 aaKnown RBP16.86■□□□□ 0.29
GPNMB-214ENST00000492858 RPS6KA4O75676 772 aa16.84■□□□□ 0.29
GPNMB-214ENST00000492858 EYA1Q99502 592 aa16.84■□□□□ 0.29
GPNMB-214ENST00000492858 CNTNAP4Q9C0A0 1308 aa16.84■□□□□ 0.29
GPNMB-214ENST00000492858 TONSLQ96HA7 1378 aa16.84■□□□□ 0.29
GPNMB-214ENST00000492858 TNRC6CQ9HCJ0 1690 aaKnown RBP16.84■□□□□ 0.29
GPNMB-214ENST00000492858 ARFGEF1Q9Y6D6 1849 aa16.84■□□□□ 0.29
GPNMB-214ENST00000492858 CHRNA5P30532 468 aa16.82■□□□□ 0.28
GPNMB-214ENST00000492858 DDR1Q08345 913 aa16.81■□□□□ 0.28
GPNMB-214ENST00000492858 SRP68Q9UHB9 627 aaKnown RBP16.81■□□□□ 0.28
GPNMB-214ENST00000492858 KIF20BQ96Q89 1820 aa16.8■□□□□ 0.28
GPNMB-214ENST00000492858 VEGFAP15692 232 aaPredicted RBP16.8■□□□□ 0.28
GPNMB-214ENST00000492858 RASSF7Q02833 373 aa16.8■□□□□ 0.28
GPNMB-214ENST00000492858 FKBP8Q14318 412 aa16.8■□□□□ 0.28
GPNMB-214ENST00000492858 WASHC2AQ641Q2 1341 aa16.79■□□□□ 0.28
GPNMB-214ENST00000492858 ZC3H4Q9UPT8 1303 aaKnown RBP16.79■□□□□ 0.28
GPNMB-214ENST00000492858 ERVV-2B6SEH9 535 aa16.79■□□□□ 0.28
GPNMB-214ENST00000492858 COL5A3P25940 1745 aaPredicted RBP16.78■□□□□ 0.28
GPNMB-214ENST00000492858 ZNF831Q5JPB2 1677 aa16.78■□□□□ 0.28
GPNMB-214ENST00000492858 USP42Q9H9J4 1324 aaKnown RBP16.77■□□□□ 0.28
GPNMB-214ENST00000492858 GLTPD2A6NH11 291 aa16.77■□□□□ 0.28
GPNMB-214ENST00000492858 CRKLP46109 303 aaKnown RBP16.77■□□□□ 0.28
GPNMB-214ENST00000492858 CARD14Q9BXL6 1004 aa16.77■□□□□ 0.28
GPNMB-214ENST00000492858 PTCD1O75127 700 aaKnown RBP16.76■□□□□ 0.27
GPNMB-214ENST00000492858 LMNB1P20700 586 aa16.76■□□□□ 0.27
GPNMB-214ENST00000492858 KDM6AO15550 1401 aaPredicted RBP16.76■□□□□ 0.27
GPNMB-214ENST00000492858 POLRMTO00411 1230 aaKnown RBP16.75■□□□□ 0.27
GPNMB-214ENST00000492858 HSP90AB1P08238 724 aaKnown RBP16.75■□□□□ 0.27
GPNMB-214ENST00000492858 CABP4P57796 275 aa16.75■□□□□ 0.27
GPNMB-214ENST00000492858 SBF1O95248 1867 aa16.75■□□□□ 0.27
GPNMB-214ENST00000492858 ANKRD26Q9UPS8 1709 aa16.74■□□□□ 0.27
GPNMB-214ENST00000492858 EIF4A2Q14240 407 aaKnown RBP16.74■□□□□ 0.27
GPNMB-214ENST00000492858 MYH14Q7Z406 1995 aaKnown RBP16.74■□□□□ 0.27
GPNMB-214ENST00000492858 TM4SF1P30408 202 aa16.73■□□□□ 0.27
GPNMB-214ENST00000492858 POLKQ9UBT6 870 aa16.73■□□□□ 0.27
GPNMB-214ENST00000492858 CDCA8Q53HL2 280 aa16.72■□□□□ 0.27
GPNMB-214ENST00000492858 ZNF530Q6P9A1 599 aaPredicted RBP16.71■□□□□ 0.27
GPNMB-214ENST00000492858 MKRN1Q9UHC7 482 aaKnown RBP16.71■□□□□ 0.27
GPNMB-214ENST00000492858 ZPR1O75312 459 aa16.7■□□□□ 0.26
GPNMB-214ENST00000492858 PLEKHO1Q53GL0 409 aaPredicted RBP16.7■□□□□ 0.26
GPNMB-214ENST00000492858 USPL1Q5W0Q7 1092 aa16.7■□□□□ 0.26
GPNMB-214ENST00000492858 POTECB2RU33 542 aa16.69■□□□□ 0.26
GPNMB-214ENST00000492858 SLC34A2O95436 690 aa16.69■□□□□ 0.26
GPNMB-214ENST00000492858 MTHFSP49914 203 aa16.69■□□□□ 0.26
GPNMB-214ENST00000492858 INTS5Q6P9B9 1019 aaKnown RBP16.69■□□□□ 0.26
GPNMB-214ENST00000492858 TTLL6Q8N841 843 aa16.69■□□□□ 0.26
GPNMB-214ENST00000492858 CREBZFQ9NS37 354 aa16.69■□□□□ 0.26
GPNMB-214ENST00000492858 NFKBIEO00221 500 aa16.68■□□□□ 0.26
GPNMB-214ENST00000492858 FOXN1O15353 648 aa16.68■□□□□ 0.26
GPNMB-214ENST00000492858 DPY19L2Q6NUT2 758 aa16.68■□□□□ 0.26
GPNMB-214ENST00000492858 NFATC2IPQ8NCF5 419 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms