RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 WDR90Q96KV7 1748 aa10.82□□□□□ -0.68
USP54-213ENST00000481991 HSP90AB2PQ58FF8 381 aa10.82□□□□□ -0.68
USP54-213ENST00000481991 ARHGEF1Q92888 912 aaKnown RBP10.82□□□□□ -0.68
USP54-213ENST00000481991 SPG7Q9UQ90 795 aa10.82□□□□□ -0.68
USP54-213ENST00000481991 KCPQ6ZWJ8 1503 aa10.82□□□□□ -0.68
USP54-213ENST00000481991 SMG6Q86US8 1419 aaKnown RBP10.82□□□□□ -0.68
USP54-213ENST00000481991 C5P01031 1676 aa10.82□□□□□ -0.68
USP54-213ENST00000481991 A0A1W2PP64 1363 aa10.81□□□□□ -0.68
USP54-213ENST00000481991 VEGFAP15692 232 aaPredicted RBP10.81□□□□□ -0.68
USP54-213ENST00000481991 MKRN1Q9UHC7 482 aaKnown RBP10.81□□□□□ -0.68
USP54-213ENST00000481991 PXDNLA1KZ92 1463 aa10.81□□□□□ -0.68
USP54-213ENST00000481991 CHRNA5P30532 468 aa10.8□□□□□ -0.68
USP54-213ENST00000481991 C4BP0C0L5 1744 aa10.8□□□□□ -0.68
USP54-213ENST00000481991 PLEKHG2Q9H7P9 1386 aa10.79□□□□□ -0.68
USP54-213ENST00000481991 KCNA3P22001 575 aa10.79□□□□□ -0.68
USP54-213ENST00000481991 N4BP2Q86UW6 1770 aaPredicted RBP10.79□□□□□ -0.68
USP54-213ENST00000481991 CD163L1Q9NR16 1453 aa10.79□□□□□ -0.68
USP54-213ENST00000481991 RGPD2P0DJD1 1756 aa10.78□□□□□ -0.68
USP54-213ENST00000481991 GYS1P13807 737 aa10.78□□□□□ -0.68
USP54-213ENST00000481991 RASSF7Q02833 373 aa10.78□□□□□ -0.68
USP54-213ENST00000481991 AIDAQ96BJ3 306 aa10.78□□□□□ -0.68
USP54-213ENST00000481991 DCAF5Q96JK2 942 aa10.78□□□□□ -0.68
USP54-213ENST00000481991 ATG3Q9NT62 314 aa10.78□□□□□ -0.68
USP54-213ENST00000481991 DPY19L2Q6NUT2 758 aa10.77□□□□□ -0.69
USP54-213ENST00000481991 MON2Q7Z3U7 1717 aa10.77□□□□□ -0.69
USP54-213ENST00000481991 CICQ96RK0 1608 aaPredicted RBP10.76□□□□□ -0.69
USP54-213ENST00000481991 GLTPD2A6NH11 291 aa10.76□□□□□ -0.69
USP54-213ENST00000481991 FYB1O15117 783 aa10.76□□□□□ -0.69
USP54-213ENST00000481991 RPS6KA4O75676 772 aa10.76□□□□□ -0.69
USP54-213ENST00000481991 SLC34A2O95436 690 aa10.76□□□□□ -0.69
USP54-213ENST00000481991 IFNL2Q8IZJ0 200 aa10.76□□□□□ -0.69
USP54-213ENST00000481991 SRP68Q9UHB9 627 aaKnown RBP10.76□□□□□ -0.69
USP54-213ENST00000481991 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
USP54-213ENST00000481991 FOXN1O15353 648 aa10.75□□□□□ -0.69
USP54-213ENST00000481991 PTCD1O75127 700 aaKnown RBP10.75□□□□□ -0.69
USP54-213ENST00000481991 NKX1-1Q15270 411 aaPredicted RBP10.75□□□□□ -0.69
USP54-213ENST00000481991 ZNF219Q9P2Y4 722 aaPredicted RBP10.75□□□□□ -0.69
USP54-213ENST00000481991 USP54Q70EL1 1684 aa10.74□□□□□ -0.69
USP54-213ENST00000481991 FAM208AQ9UK61 1670 aaKnown RBP10.74□□□□□ -0.69
USP54-213ENST00000481991 LMNB1P20700 586 aa10.74□□□□□ -0.69
USP54-213ENST00000481991 FKBP8Q14318 412 aa10.74□□□□□ -0.69
USP54-213ENST00000481991 FAM161AQ3B820 660 aa10.74□□□□□ -0.69
USP54-213ENST00000481991 RC3H1Q5TC82 1133 aaKnown RBP10.74□□□□□ -0.69
USP54-213ENST00000481991 UBR3Q6ZT12 1888 aa10.74□□□□□ -0.69
USP54-213ENST00000481991 ZPR1O75312 459 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 PHKG2P15735 406 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 CABP4P57796 275 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 EMILIN1Q9Y6C2 1016 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 RTL1A6NKG5 1358 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 INSRP06213 1382 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 C10orf71Q711Q0 1435 aa10.73□□□□□ -0.69
USP54-213ENST00000481991 ST20-MTHFSA0A0A6YYL1 179 aa10.72□□□□□ -0.69
USP54-213ENST00000481991 CCDC85CA6NKD9 419 aa10.72□□□□□ -0.69
USP54-213ENST00000481991 CTCFP49711 727 aaPredicted RBP10.72□□□□□ -0.69
USP54-213ENST00000481991 LBX1P52954 281 aa10.72□□□□□ -0.69
USP54-213ENST00000481991 CFAP44Q96MT7 982 aa10.72□□□□□ -0.69
USP54-213ENST00000481991 PUS7Q96PZ0 661 aaKnown RBP10.72□□□□□ -0.69
USP54-213ENST00000481991 SLC4A9Q96Q91 983 aa10.72□□□□□ -0.69
USP54-213ENST00000481991 DDR1Q08345 913 aa10.71□□□□□ -0.69
USP54-213ENST00000481991 EYA1Q99502 592 aa10.71□□□□□ -0.69
USP54-213ENST00000481991 PRDM10Q9NQV6 1147 aa10.71□□□□□ -0.69
USP54-213ENST00000481991 CREBZFQ9NS37 354 aa10.71□□□□□ -0.69
USP54-213ENST00000481991 ITGB4P16144 1822 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 FLT4P35916 1363 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 CRKLP46109 303 aaKnown RBP10.7□□□□□ -0.7
USP54-213ENST00000481991 ERFEQ4G0M1 354 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 CHADLQ6NUI6 762 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 TTLL6Q8N841 843 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 ZNF622Q969S3 477 aaKnown RBP eCLIP10.7□□□□□ -0.7
USP54-213ENST00000481991 CLEC11AQ9Y240 323 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 TOGARAM1Q9Y4F4 1720 aa10.7□□□□□ -0.7
USP54-213ENST00000481991 ERVV-2B6SEH9 535 aa10.69□□□□□ -0.7
USP54-213ENST00000481991 H0YIN7 160 aa10.69□□□□□ -0.7
USP54-213ENST00000481991 TNNT2P45379 298 aaPredicted RBP10.69□□□□□ -0.7
USP54-213ENST00000481991 USPL1Q5W0Q7 1092 aa10.69□□□□□ -0.7
USP54-213ENST00000481991 C2CD5Q86YS7 1000 aa10.69□□□□□ -0.7
USP54-213ENST00000481991 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.69□□□□□ -0.7
USP54-213ENST00000481991 PCNTO95613 3336 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 CNTNAP4Q9C0A0 1308 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 POTECB2RU33 542 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 POLRMTO00411 1230 aaKnown RBP10.68□□□□□ -0.7
USP54-213ENST00000481991 SLC24A1O60721 1099 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 VEGFBP49765 207 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 MTHFSP49914 203 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 MLLT1Q03111 559 aaPredicted RBP10.68□□□□□ -0.7
USP54-213ENST00000481991 BICDL1Q6ZP65 573 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 ABHD8Q96I13 439 aa10.68□□□□□ -0.7
USP54-213ENST00000481991 ZC3H4Q9UPT8 1303 aaKnown RBP10.67□□□□□ -0.7
USP54-213ENST00000481991 DDNO94850 711 aaPredicted RBP10.67□□□□□ -0.7
USP54-213ENST00000481991 HSP90AB1P08238 724 aaKnown RBP10.67□□□□□ -0.7
USP54-213ENST00000481991 POTEIP0CG38 1075 aa10.67□□□□□ -0.7
USP54-213ENST00000481991 POTEJP0CG39 1038 aa10.67□□□□□ -0.7
USP54-213ENST00000481991 TM4SF1P30408 202 aa10.67□□□□□ -0.7
USP54-213ENST00000481991 PLEKHO1Q53GL0 409 aaPredicted RBP10.67□□□□□ -0.7
USP54-213ENST00000481991 EAPPQ56P03 285 aaPredicted RBP10.67□□□□□ -0.7
USP54-213ENST00000481991 NFATC2IPQ8NCF5 419 aa10.67□□□□□ -0.7
USP54-213ENST00000481991 C4AP0C0L4 1744 aa10.67□□□□□ -0.7
USP54-213ENST00000481991 USP42Q9H9J4 1324 aaKnown RBP10.66□□□□□ -0.7
USP54-213ENST00000481991 NPHP1O15259 732 aa10.66□□□□□ -0.7
USP54-213ENST00000481991 C21orf2O43822 256 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms