RNA–Protein interactions for RNA: ENST00000427191.6

PTPN13-203, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 8,487 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-203ENST00000427191 TSNARE1Q96NA8 513 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 NSRP1Q9H0G5 558 aaKnown RBP16.75■□□□□ 0.27
PTPN13-203ENST00000427191 STMN4Q9H169 189 aaPredicted RBP16.75■□□□□ 0.27
PTPN13-203ENST00000427191 PAXBP1Q9Y5B6 917 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 TTC21AQ8NDW8 1320 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 BRPF3Q9ULD4 1205 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 ATP2B2Q01814 1243 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 LARP1Q6PKG0 1096 aaKnown RBP16.75■□□□□ 0.27
PTPN13-203ENST00000427191 NUP133Q8WUM0 1156 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 DDX23Q9BUQ8 820 aaKnown RBP16.75■□□□□ 0.27
PTPN13-203ENST00000427191 TATP17735 454 aaPredicted RBP16.75■□□□□ 0.27
PTPN13-203ENST00000427191 ZNF692Q9BU19 519 aaPredicted RBP16.75■□□□□ 0.27
PTPN13-203ENST00000427191 CEP112Q8N8E3 955 aa16.75■□□□□ 0.27
PTPN13-203ENST00000427191 STXBP4Q6ZWJ1 553 aa16.74■□□□□ 0.27
PTPN13-203ENST00000427191 AKAP2Q9Y2D5 859 aa16.74■□□□□ 0.27
PTPN13-203ENST00000427191 CCDC113Q9H0I3 377 aa16.74■□□□□ 0.27
PTPN13-203ENST00000427191 NOB1Q9ULX3 412 aaKnown RBP16.74■□□□□ 0.27
PTPN13-203ENST00000427191 SPG7Q9UQ90 795 aa16.74■□□□□ 0.27
PTPN13-203ENST00000427191 KANK3Q6NY19 840 aa16.74■□□□□ 0.27
PTPN13-203ENST00000427191 SMARCC1Q92922 1105 aaPredicted RBP16.74■□□□□ 0.27
PTPN13-203ENST00000427191 HMGB1P1B2RPK0 211 aaPredicted RBP16.73■□□□□ 0.27
PTPN13-203ENST00000427191 KIF4BQ2VIQ3 1234 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 CTR9Q6PD62 1173 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 MTHFSP49914 203 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 CCDC178Q5BJE1 867 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 RPAP2Q8IXW5 612 aaPredicted RBP16.73■□□□□ 0.27
PTPN13-203ENST00000427191 SSBP05455 408 aaKnown RBP eCLIP16.73■□□□□ 0.27
PTPN13-203ENST00000427191 AMPD3Q01432 767 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 LRRC27Q9C0I9 530 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 EHBP1L1Q8N3D4 1523 aa16.73■□□□□ 0.27
PTPN13-203ENST00000427191 PABPN1LA6NDY0 278 aaKnown RBP16.72■□□□□ 0.27
PTPN13-203ENST00000427191 NLRP6P59044 892 aa16.72■□□□□ 0.27
PTPN13-203ENST00000427191 JAKMIP1Q96N16 626 aaKnown RBP16.72■□□□□ 0.27
PTPN13-203ENST00000427191 PPP1R1BQ9UD71 204 aaPredicted RBP16.72■□□□□ 0.27
PTPN13-203ENST00000427191 CKAP4Q07065 602 aaKnown RBP16.72■□□□□ 0.27
PTPN13-203ENST00000427191 AACSQ86V21 672 aa16.72■□□□□ 0.27
PTPN13-203ENST00000427191 PRIMPOLQ96LW4 560 aa16.72■□□□□ 0.27
PTPN13-203ENST00000427191 HECW1Q76N89 1606 aa16.72■□□□□ 0.27
PTPN13-203ENST00000427191 FANCD2Q9BXW9 1451 aa16.72■□□□□ 0.27
PTPN13-203ENST00000427191 CCDC12Q8WUD4 166 aaPredicted RBP16.72■□□□□ 0.27
PTPN13-203ENST00000427191 IKBKGQ9Y6K9 419 aa16.72■□□□□ 0.27
PTPN13-203ENST00000427191 DYNC1I1O14576 645 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 STK3Q13188 491 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 ANKS4BQ8N8V4 417 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 TTC12Q9H892 705 aaPredicted RBP16.71■□□□□ 0.27
PTPN13-203ENST00000427191 EFCAB5A4FU69 1503 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 A0A087WZG4 1122 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 GOPCQ9HD26 462 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 DDX19AQ9NUU7 478 aaKnown RBP16.71■□□□□ 0.27
PTPN13-203ENST00000427191 ADAMTS8Q9UP79 889 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 SLC4A2P04920 1241 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 SPECC1Q5M775 1068 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 TMOD2Q9NZR1 351 aa16.71■□□□□ 0.27
PTPN13-203ENST00000427191 LRRC9Q6ZRR7 1453 aa16.71■□□□□ 0.26
PTPN13-203ENST00000427191 HSPA4P34932 840 aa16.71■□□□□ 0.26
PTPN13-203ENST00000427191 DAAM2Q86T65 1068 aa16.71■□□□□ 0.26
PTPN13-203ENST00000427191 NUP88Q99567 741 aaPredicted RBP16.71■□□□□ 0.26
PTPN13-203ENST00000427191 PRKAR2BP31323 418 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 WDHD1O75717 1129 aaPredicted RBP16.7■□□□□ 0.26
PTPN13-203ENST00000427191 CASTP20810 708 aaKnown RBP16.7■□□□□ 0.26
PTPN13-203ENST00000427191 CTNNA2P26232 953 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 PRPHP41219 470 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 STX1AQ16623 288 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 ABTB2Q8N961 1025 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 DDX46Q7L014 1031 aaKnown RBP16.7■□□□□ 0.26
PTPN13-203ENST00000427191 AIDAQ96BJ3 306 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 CEP126Q9P2H0 1117 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 TTC14Q96N46 770 aa16.7■□□□□ 0.26
PTPN13-203ENST00000427191 PPP2R1AP30153 589 aa16.69■□□□□ 0.26
PTPN13-203ENST00000427191 BMS1Q14692 1282 aaKnown RBP16.69■□□□□ 0.26
PTPN13-203ENST00000427191 RNF187Q5TA31 235 aaPredicted RBP16.69■□□□□ 0.26
PTPN13-203ENST00000427191 RNF41Q9H4P4 317 aaPredicted RBP16.69■□□□□ 0.26
PTPN13-203ENST00000427191 GLRX3O76003 335 aaKnown RBP16.69■□□□□ 0.26
PTPN13-203ENST00000427191 HOMER2Q9NSB8 354 aa16.69■□□□□ 0.26
PTPN13-203ENST00000427191 SLF2Q8IX21 1173 aa16.69■□□□□ 0.26
PTPN13-203ENST00000427191 SYCE3A1L190 88 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 CCDC155Q8N6L0 562 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 ANKRD30BQ9BXX2 1392 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 IGHMBP2P38935 993 aaKnown RBP16.68■□□□□ 0.26
PTPN13-203ENST00000427191 CCDC171Q6TFL3 1326 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 DNAAF4Q8WXU2 420 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 ACTN2P35609 894 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 CABP4P57796 275 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 CUL5Q93034 780 aa16.68■□□□□ 0.26
PTPN13-203ENST00000427191 EXOSC9Q06265 439 aaKnown RBP16.67■□□□□ 0.26
PTPN13-203ENST00000427191 USP37Q86T82 979 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 FKBP4Q02790 459 aaKnown RBP eCLIP16.67■□□□□ 0.26
PTPN13-203ENST00000427191 UVSSAQ2YD98 709 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 RASAL2Q9UJF2 1139 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 ATAD2Q6PL18 1390 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 UBE4AQ14139 1066 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 CASKIN1Q8WXD9 1431 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 TICAM2Q86XR7 235 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 KIF1BPQ96EK5 621 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 SSX2IPQ9Y2D8 614 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 GAPVD1Q14C86 1478 aa16.67■□□□□ 0.26
PTPN13-203ENST00000427191 PIBF1Q8WXW3 757 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 HSF2BPO75031 334 aa16.66■□□□□ 0.26
PTPN13-203ENST00000427191 ZNF652Q9Y2D9 606 aa16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms