RNA–Protein interactions for RNA: ENST00000416204.1

LINC01238-201, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

TSL 2 BASIC

Gene LINC01238, Length 590 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-201ENST00000416204 ATG3Q9NT62 314 aa13.1□□□□□ -0.31
LINC01238-201ENST00000416204 SPG7Q9UQ90 795 aa13.1□□□□□ -0.31
LINC01238-201ENST00000416204 MAP2P11137 1827 aaKnown RBP13.1□□□□□ -0.31
LINC01238-201ENST00000416204 TMF1P82094 1093 aa13.09□□□□□ -0.31
LINC01238-201ENST00000416204 NKX1-1Q15270 411 aaPredicted RBP13.09□□□□□ -0.31
LINC01238-201ENST00000416204 TRAPPC3LQ5T215 181 aa13.09□□□□□ -0.31
LINC01238-201ENST00000416204 C16orf71Q8IYS4 520 aaPredicted RBP13.09□□□□□ -0.31
LINC01238-201ENST00000416204 SLC4A9Q96Q91 983 aa13.09□□□□□ -0.31
LINC01238-201ENST00000416204 KIAA1551Q9HCM1 1747 aa13.09□□□□□ -0.31
LINC01238-201ENST00000416204 PKD1L3Q7Z443 1732 aa13.08□□□□□ -0.32
LINC01238-201ENST00000416204 C10orf71Q711Q0 1435 aa13.08□□□□□ -0.32
LINC01238-201ENST00000416204 HMGB2P26583 209 aaKnown RBP13.08□□□□□ -0.32
LINC01238-201ENST00000416204 TGFB2P61812 414 aa13.08□□□□□ -0.32
LINC01238-201ENST00000416204 ARHGEF1Q92888 912 aaKnown RBP13.08□□□□□ -0.32
LINC01238-201ENST00000416204 EYA1Q99502 592 aa13.08□□□□□ -0.32
LINC01238-201ENST00000416204 RTCBQ9Y3I0 505 aaKnown RBP13.08□□□□□ -0.32
LINC01238-201ENST00000416204 KCPQ6ZWJ8 1503 aa13.08□□□□□ -0.32
LINC01238-201ENST00000416204 PHKG2P15735 406 aa13.07□□□□□ -0.32
LINC01238-201ENST00000416204 KLRG1Q96E93 195 aa13.07□□□□□ -0.32
LINC01238-201ENST00000416204 CARD14Q9BXL6 1004 aa13.07□□□□□ -0.32
LINC01238-201ENST00000416204 RRAGCQ9HB90 399 aa13.07□□□□□ -0.32
LINC01238-201ENST00000416204 CCDC87Q9NVE4 849 aa13.07□□□□□ -0.32
LINC01238-201ENST00000416204 WDR90Q96KV7 1748 aa13.07□□□□□ -0.32
LINC01238-201ENST00000416204 GYS1P13807 737 aa13.06□□□□□ -0.32
LINC01238-201ENST00000416204 KCNA3P22001 575 aa13.06□□□□□ -0.32
LINC01238-201ENST00000416204 TNNT2P45379 298 aaPredicted RBP13.06□□□□□ -0.32
LINC01238-201ENST00000416204 RBM46Q8TBY0 533 aaKnown RBP13.06□□□□□ -0.32
LINC01238-201ENST00000416204 RNF181Q9P0P0 153 aa13.06□□□□□ -0.32
LINC01238-201ENST00000416204 SRP68Q9UHB9 627 aaKnown RBP13.06□□□□□ -0.32
LINC01238-201ENST00000416204 PARP3Q9Y6F1 533 aa13.06□□□□□ -0.32
LINC01238-201ENST00000416204 KIF20BQ96Q89 1820 aa13.06□□□□□ -0.32
LINC01238-201ENST00000416204 CHRNA5P30532 468 aa13.05□□□□□ -0.32
LINC01238-201ENST00000416204 RFC4P35249 363 aa13.05□□□□□ -0.32
LINC01238-201ENST00000416204 IFNL2Q8IZJ0 200 aa13.05□□□□□ -0.32
LINC01238-201ENST00000416204 TNS4Q8IZW8 715 aa13.05□□□□□ -0.32
LINC01238-201ENST00000416204 NLGN1Q8N2Q7 840 aa13.05□□□□□ -0.32
LINC01238-201ENST00000416204 C4AP0C0L4 1744 aa13.04□□□□□ -0.32
LINC01238-201ENST00000416204 KDRP35968 1356 aa13.04□□□□□ -0.32
LINC01238-201ENST00000416204 KIF13BQ9NQT8 1826 aa13.04□□□□□ -0.32
LINC01238-201ENST00000416204 PTCD1O75127 700 aaKnown RBP13.03□□□□□ -0.32
LINC01238-201ENST00000416204 NCAPD2Q15021 1401 aa13.03□□□□□ -0.32
LINC01238-201ENST00000416204 RASSF7Q02833 373 aa13.02□□□□□ -0.33
LINC01238-201ENST00000416204 DDR1Q08345 913 aa13.02□□□□□ -0.33
LINC01238-201ENST00000416204 FKBP8Q14318 412 aa13.02□□□□□ -0.33
LINC01238-201ENST00000416204 DALRD3Q5D0E6 543 aaKnown RBP13.02□□□□□ -0.33
LINC01238-201ENST00000416204 JMYQ8N9B5 988 aa13.02□□□□□ -0.33
LINC01238-201ENST00000416204 PIM2Q9P1W9 311 aa13.02□□□□□ -0.33
LINC01238-201ENST00000416204 KIF24Q5T7B8 1368 aa13.02□□□□□ -0.33
LINC01238-201ENST00000416204 RPS6KA4O75676 772 aa13.01□□□□□ -0.33
LINC01238-201ENST00000416204 FSTL1Q12841 308 aa13.01□□□□□ -0.33
LINC01238-201ENST00000416204 EIF4A2Q14240 407 aaKnown RBP13.01□□□□□ -0.33
LINC01238-201ENST00000416204 DCAF5Q96JK2 942 aa13.01□□□□□ -0.33
LINC01238-201ENST00000416204 WASHC2AQ641Q2 1341 aa13.01□□□□□ -0.33
LINC01238-201ENST00000416204 KDM2BQ8NHM5 1336 aa13.01□□□□□ -0.33
LINC01238-201ENST00000416204 PLEKHG2Q9H7P9 1386 aa13□□□□□ -0.33
LINC01238-201ENST00000416204 POLR3GLQ9BT43 218 aa13□□□□□ -0.33
LINC01238-201ENST00000416204 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13□□□□□ -0.33
LINC01238-201ENST00000416204 POLKQ9UBT6 870 aa13□□□□□ -0.33
LINC01238-201ENST00000416204 CNTNAP4Q9C0A0 1308 aa12.99□□□□□ -0.33
LINC01238-201ENST00000416204 ADRA2BP18089 450 aa12.99□□□□□ -0.33
LINC01238-201ENST00000416204 CRKLP46109 303 aaKnown RBP12.99□□□□□ -0.33
LINC01238-201ENST00000416204 CABP4P57796 275 aa12.99□□□□□ -0.33
LINC01238-201ENST00000416204 RC3H1Q5TC82 1133 aaKnown RBP12.99□□□□□ -0.33
LINC01238-201ENST00000416204 KDM6AO15550 1401 aaPredicted RBP12.98□□□□□ -0.33
LINC01238-201ENST00000416204 BRCA1P38398 1863 aaKnown RBP12.98□□□□□ -0.33
LINC01238-201ENST00000416204 HSPA1AP0DMV8 641 aaKnown RBP12.98□□□□□ -0.33
LINC01238-201ENST00000416204 HSPA1BP0DMV9 641 aaKnown RBP12.98□□□□□ -0.33
LINC01238-201ENST00000416204 ZNF530Q6P9A1 599 aaPredicted RBP12.98□□□□□ -0.33
LINC01238-201ENST00000416204 ERVV-2B6SEH9 535 aa12.97□□□□□ -0.33
LINC01238-201ENST00000416204 SLC24A1O60721 1099 aa12.97□□□□□ -0.33
LINC01238-201ENST00000416204 PRELPP51888 382 aa12.97□□□□□ -0.33
LINC01238-201ENST00000416204 SMC1BQ8NDV3 1235 aa12.97□□□□□ -0.33
LINC01238-201ENST00000416204 COL5A3P25940 1745 aaPredicted RBP12.96□□□□□ -0.33
LINC01238-201ENST00000416204 USP42Q9H9J4 1324 aaKnown RBP12.96□□□□□ -0.33
LINC01238-201ENST00000416204 AEBP1Q8IUX7 1158 aa12.96□□□□□ -0.33
LINC01238-201ENST00000416204 MYH14Q7Z406 1995 aaKnown RBP12.96□□□□□ -0.34
LINC01238-201ENST00000416204 ARFGEF1Q9Y6D6 1849 aa12.95□□□□□ -0.34
LINC01238-201ENST00000416204 POLRMTO00411 1230 aaKnown RBP12.95□□□□□ -0.34
LINC01238-201ENST00000416204 USPL1Q5W0Q7 1092 aa12.95□□□□□ -0.34
LINC01238-201ENST00000416204 NFATC2IPQ8NCF5 419 aa12.95□□□□□ -0.34
LINC01238-201ENST00000416204 ANKRD26Q9UPS8 1709 aa12.95□□□□□ -0.34
LINC01238-201ENST00000416204 MTHFSP49914 203 aa12.94□□□□□ -0.34
LINC01238-201ENST00000416204 PLEKHO1Q53GL0 409 aaPredicted RBP12.94□□□□□ -0.34
LINC01238-201ENST00000416204 CDCA8Q53HL2 280 aa12.94□□□□□ -0.34
LINC01238-201ENST00000416204 INTS5Q6P9B9 1019 aaKnown RBP12.94□□□□□ -0.34
LINC01238-201ENST00000416204 ZNF219Q9P2Y4 722 aaPredicted RBP12.94□□□□□ -0.34
LINC01238-201ENST00000416204 HSP90AB1P08238 724 aaKnown RBP12.93□□□□□ -0.34
LINC01238-201ENST00000416204 DNAJC10Q8IXB1 793 aa12.93□□□□□ -0.34
LINC01238-201ENST00000416204 TNRC6CQ9HCJ0 1690 aaKnown RBP12.93□□□□□ -0.34
LINC01238-201ENST00000416204 ZPR1O75312 459 aa12.92□□□□□ -0.34
LINC01238-201ENST00000416204 TM4SF1P30408 202 aa12.92□□□□□ -0.34
LINC01238-201ENST00000416204 GLTPD2A6NH11 291 aa12.91□□□□□ -0.34
LINC01238-201ENST00000416204 VEGFAP15692 232 aaPredicted RBP12.91□□□□□ -0.34
LINC01238-201ENST00000416204 LMNB1P20700 586 aa12.91□□□□□ -0.34
LINC01238-201ENST00000416204 NFIXQ14938 502 aa12.91□□□□□ -0.34
LINC01238-201ENST00000416204 C1orf141Q5JVX7 400 aa12.91□□□□□ -0.34
LINC01238-201ENST00000416204 MKRN1Q9UHC7 482 aaKnown RBP12.91□□□□□ -0.34
LINC01238-201ENST00000416204 SBF1O95248 1867 aa12.91□□□□□ -0.34
LINC01238-201ENST00000416204 TJP1Q07157 1748 aa12.91□□□□□ -0.34
LINC01238-201ENST00000416204 BICDL1Q6ZP65 573 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms