RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 SPECC1Q5M775 1068 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 PNISRQ8TF01 805 aaKnown RBP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 ST20-MTHFSA0A0A6YYL1 179 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 FBF1Q8TES7 1133 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 MPHOSPH6Q99547 160 aaKnown RBP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 GPATCH11Q8N954 259 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 SMC6Q96SB8 1091 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 NUP88Q99567 741 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 RAPGEF2Q9Y4G8 1499 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 KIF4AO95239 1232 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 MAP4K4O95819 1239 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 ZSCAN30Q86W11 494 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 AIMP1Q12904 312 aaKnown RBP9.12□□□□□ -0.95
SYNE1-210ENST00000409694 MAP7D1Q3KQU3 841 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 SCLT1Q96NL6 688 aa9.12□□□□□ -0.95
SYNE1-210ENST00000409694 A0A1W2PRG0 241 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 SURF6O75683 361 aaKnown RBP9.11□□□□□ -0.95
SYNE1-210ENST00000409694 NUP133Q8WUM0 1156 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 APAF1O14727 1248 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 CAVIN2O95810 425 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 TOP1P11387 765 aaKnown RBP9.11□□□□□ -0.95
SYNE1-210ENST00000409694 CUL5Q93034 780 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 PUS7Q96PZ0 661 aaKnown RBP9.11□□□□□ -0.95
SYNE1-210ENST00000409694 USH1CQ9Y6N9 552 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 TDO2P48775 406 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 IL27Q8NEV9 243 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC183Q5T5S1 534 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC110Q8TBZ0 833 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 BLOC1S2Q6QNY1 142 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC14Q49A88 953 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 PLEKHO1Q53GL0 409 aaPredicted RBP9.11□□□□□ -0.95
SYNE1-210ENST00000409694 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.11□□□□□ -0.95
SYNE1-210ENST00000409694 PDRG1Q9NUG6 133 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 ODF2LQ9ULJ1 636 aa9.11□□□□□ -0.95
SYNE1-210ENST00000409694 LMAN1P49257 510 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 AMPD3Q01432 767 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 KIAA1524Q8TCG1 905 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 LRRC27Q9C0I9 530 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 TMOD2Q9NZR1 351 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 A0A087WZG4 1122 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 MCM5P33992 734 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 CEP83Q9Y592 693 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 ABCC8Q09428 1581 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 TMCO5BA8MYB1 307 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 ZFYP08048 801 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-210ENST00000409694 RBM5P52756 815 aaKnown RBP eCLIP9.1□□□□□ -0.95
SYNE1-210ENST00000409694 KIF4BQ2VIQ3 1234 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 MNAT1P51948 309 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 MPHOSPH8Q99549 860 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 RAI14Q9P0K7 980 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 USP37Q86T82 979 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 PAXBP1Q9Y5B6 917 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC88BA6NC98 1476 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 NUTM2FA1L443 756 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 GMNNO75496 209 aa9.1□□□□□ -0.95
SYNE1-210ENST00000409694 CLGNO14967 610 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 SCAND2PQ9GZW5 306 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 HLTFQ14527 1009 aaKnown RBP eCLIP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 PLEKHH2Q8IVE3 1493 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC160A6NGH7 325 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 MXRA7P84157 204 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 CPSF2Q9P2I0 782 aaKnown RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 ESPNB1AK53 854 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 TACC1O75410 805 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 U3KPZ7 1027 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 CCDC12Q8WUD4 166 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 KDM4AO75164 1064 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 NUTM2DQ5VT03 806 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 MAATS1Q7Z4T9 603 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 MINK1Q8N4C8 1332 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 GTF2A1P52655 376 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 SF3B2Q13435 895 aaKnown RBP9.09□□□□□ -0.95
SYNE1-210ENST00000409694 CLIP2Q9UDT6 1046 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 SOGA1O94964 1423 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 ALDH3A1P30838 453 aa9.09□□□□□ -0.95
SYNE1-210ENST00000409694 TPD52P55327 224 aaPredicted RBP9.09□□□□□ -0.96
SYNE1-210ENST00000409694 TBC1D5Q92609 795 aa9.09□□□□□ -0.96
SYNE1-210ENST00000409694 ATP2A1O14983 1001 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 CEP128Q6ZU80 1094 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 MACROD2A1Z1Q3 448 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 DYNC1I1O14576 645 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 PDE3AQ14432 1141 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 KANK3Q6NY19 840 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 MAP3K9P80192 1104 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 KIAA0753Q2KHM9 967 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.08□□□□□ -0.96
SYNE1-210ENST00000409694 JAKMIP2Q96AA8 810 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 CCDC77Q9BR77 488 aa9.08□□□□□ -0.96
SYNE1-210ENST00000409694 BAG4O95429 457 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 STK3Q13188 491 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 SLF2Q8IX21 1173 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 SELENOOQ9BVL4 669 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 HNRNPMP52272 730 aaKnown RBP eCLIP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 DNAJC21Q5F1R6 531 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 SH2B1Q9NRF2 756 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 RPUSD2Q8IZ73 545 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 OPA1O60313 960 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 CASTP20810 708 aaKnown RBP9.07□□□□□ -0.96
SYNE1-210ENST00000409694 SNX16P57768 344 aa9.07□□□□□ -0.96
SYNE1-210ENST00000409694 STX1AQ16623 288 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms