RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 CFAP100Q494V2 611 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 CTR9Q6PD62 1173 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 NECAB1Q8N987 351 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 GIMAP7Q8NHV1 300 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 CARD14Q9BXL6 1004 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.94□□□□□ -0.66
COL28A1-201ENST00000399429 PPP6R1Q9UPN7 881 aa10.94□□□□□ -0.66
COL28A1-201ENST00000399429 PRDM2Q13029 1718 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 PHACTR2O75167 634 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 UBTFL1P0CB47 393 aaPredicted RBP10.93□□□□□ -0.66
COL28A1-201ENST00000399429 SYT1P21579 422 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 PRPF40BQ6NWY9 871 aaKnown RBP10.93□□□□□ -0.66
COL28A1-201ENST00000399429 ZMYM3Q14202 1370 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 ZSCAN26Q16670 478 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 HECW1Q76N89 1606 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 PRAG1Q86YV5 1406 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 CFAP43Q8NDM7 1665 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 ZBTB7BO15156 539 aaPredicted RBP10.93□□□□□ -0.66
COL28A1-201ENST00000399429 EIF2S2P20042 333 aaKnown RBP10.93□□□□□ -0.66
COL28A1-201ENST00000399429 AEBP2Q6ZN18 517 aaPredicted RBP10.93□□□□□ -0.66
COL28A1-201ENST00000399429 JPH4Q96JJ6 628 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 RUFY1Q96T51 708 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 CARMIL2Q6F5E8 1435 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 ASXL1Q8IXJ9 1541 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 UGGT2Q9NYU1 1516 aa10.93□□□□□ -0.66
COL28A1-201ENST00000399429 CALRP27797 417 aaKnown RBP10.92□□□□□ -0.66
COL28A1-201ENST00000399429 JAKMIP3Q5VZ66 844 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 ZSCAN31Q96LW9 406 aaPredicted RBP10.92□□□□□ -0.66
COL28A1-201ENST00000399429 NRBP1Q9UHY1 535 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 TSPYL4Q9UJ04 414 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 PIK3C2GO75747 1445 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 GNAI3P08754 354 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 GSPT1P15170 499 aaKnown RBP10.92□□□□□ -0.66
COL28A1-201ENST00000399429 FAM173BQ6P4H8 233 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 SYNE3Q6ZMZ3 975 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 INTS4Q96HW7 963 aaKnown RBP10.92□□□□□ -0.66
COL28A1-201ENST00000399429 ESYT1Q9BSJ8 1104 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 USP16Q9Y5T5 823 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 BIVM-ERCC5R4GMW8 1640 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 ANO10Q9NW15 660 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 VPS18Q9P253 973 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 DDX41Q9UJV9 622 aaKnown RBP10.92□□□□□ -0.66
COL28A1-201ENST00000399429 CFAP45Q9UL16 551 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 A0A0G2JS52 829 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 F6X3S4 739 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 BIN1O00499 593 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 PDE1AP54750 535 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 GSDMDP57764 484 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 CCDC70Q6NSX1 233 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 OLFM4Q6UX06 510 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 MICALL1Q8N3F8 863 aa10.92□□□□□ -0.66
COL28A1-201ENST00000399429 KIAA0754O94854 1291 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 CASQ1P31415 396 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 GNG11P61952 73 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 ZSCAN25Q6NSZ9 544 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 BLOC1S2Q6QNY1 142 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 STK38Q15208 465 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 CTNNA3Q9UI47 895 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 KDM5BQ9UGL1 1544 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 PZPP20742 1482 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 ABCC11Q96J66 1382 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 A0A1B0GUL7 405 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 BRPF1P55201 1214 aaPredicted RBP10.91□□□□□ -0.66
COL28A1-201ENST00000399429 DCTPP1Q9H773 170 aa10.91□□□□□ -0.66
COL28A1-201ENST00000399429 TSPYL6Q8N831 410 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 CBX8Q9HC52 389 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 ATAD2Q6PL18 1390 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 IVLP07476 585 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 CLASRPQ8N2M8 674 aaKnown RBP10.9□□□□□ -0.66
COL28A1-201ENST00000399429 COL17A1Q9UMD9 1497 aaPredicted RBP10.9□□□□□ -0.66
COL28A1-201ENST00000399429 CPLX1O14810 134 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 RAB11FIP3O75154 756 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 CPA1P15085 419 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 ZNF75DP51815 510 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 ISM2Q6H9L7 571 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 TCEANC2Q96MN5 208 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 MEIS3Q99687 375 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 CAMSAP2Q08AD1 1489 aa10.9□□□□□ -0.66
COL28A1-201ENST00000399429 UHRF1BP1Q6BDS2 1440 aa10.9□□□□□ -0.67
COL28A1-201ENST00000399429 KDM6BO15054 1643 aa10.9□□□□□ -0.67
COL28A1-201ENST00000399429 PPFIA3O75145 1194 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 FCHSD2O94868 740 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 TSR1Q2NL82 804 aaKnown RBP10.89□□□□□ -0.67
COL28A1-201ENST00000399429 FSD1Q9BTV5 496 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 ZSCAN12O43309 604 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 SIL1Q9H173 461 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 C9orf78Q9NZ63 289 aaPredicted RBP10.89□□□□□ -0.67
COL28A1-201ENST00000399429 HDAC5Q9UQL6 1122 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 NUTM2FA1L443 756 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 OAS2P29728 719 aaKnown RBP10.89□□□□□ -0.67
COL28A1-201ENST00000399429 CDR1P51861 262 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 NFE2L2Q16236 605 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 STX1AQ16623 288 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 CT47A1Q5JQC4 288 aaPredicted RBP10.89□□□□□ -0.67
COL28A1-201ENST00000399429 CAGE1Q8TC20 777 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 SLC26A8Q96RN1 970 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 AK2P54819 239 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 FBXO38Q6PIJ6 1188 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 KIF2CQ99661 725 aa10.89□□□□□ -0.67
COL28A1-201ENST00000399429 SRRTQ9BXP5 876 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms