RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 NACA2Q9H009 215 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 AFG3L2Q9Y4W6 797 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 ELL2O00472 640 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 NAA16Q6N069 864 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 PKNOX2Q96KN3 472 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CLIP1P30622 1438 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 INPP1P49441 399 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CALCOCO2Q13137 446 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 RIC3Q7Z5B4 369 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 PPFIBP1Q86W92 1011 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CKAP2LQ8IYA6 745 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 BAG1Q99933 345 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CCDC77Q9BR77 488 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 GCOM1H8Y6P7 765 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 MYZAPP0CAP1 466 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 HSPA5P11021 654 aaKnown RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 ACTN2P35609 894 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 SETDB1Q15047 1291 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 TMTC4Q5T4D3 741 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 UTP14CQ5TAP6 766 aaKnown RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 NBPF11Q86T75 865 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CRACR2BQ8N4Y2 399 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 TACC3Q9Y6A5 838 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 OCM2P0CE71 109 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 OCMP0CE72 109 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-202ENST00000375405 GPATCH11Q8N954 259 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 FBF1Q8TES7 1133 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 CNNM1Q9NRU3 951 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 SAMM50Q9Y512 469 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 ATF3P18847 181 aa5.38□□□□□ -1.55
SCN1A-202ENST00000375405 DDX58O95786 925 aaKnown RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 SERPINC1P01008 464 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 PRPHP41219 470 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 NLRP6P59044 892 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 BICDL1Q6ZP65 573 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 DDX46Q7L014 1031 aaKnown RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CEP112Q8N8E3 955 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CLSTN2Q9H4D0 955 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 WWC3Q9ULE0 1092 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 SPTY2D1Q68D10 685 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 GBP6Q6ZN66 633 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 RBM46Q8TBY0 533 aaKnown RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 FAM200AQ8TCP9 573 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CCDC102AQ96A19 550 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 BICD1Q96G01 975 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CFDP1Q9UEE9 299 aaPredicted RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 MICAL3Q7RTP6 2002 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 A0A1W2PRG0 241 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 DHX8Q14562 1220 aaKnown RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CCER2I3L3R5 266 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 GNL3LQ9NVN8 582 aaKnown RBP5.37□□□□□ -1.55
SCN1A-202ENST00000375405 SMC3Q9UQE7 1217 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CEP162Q5TB80 1403 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 GOLGA6BA6NDN3 693 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 MGEA5O60502 916 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 ZC4H2Q9NQZ6 224 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 SPDYE2BA6NHP3 402 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 RNF8O76064 485 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 SPDYE6P0CI01 402 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 AMOTQ4VCS5 1084 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 PHLDB2Q86SQ0 1253 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 ANKRD35Q8N283 1001 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 FRMD4BQ9Y2L6 1034 aa5.37□□□□□ -1.55
SCN1A-202ENST00000375405 CCP110O43303 1012 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 XPAP23025 273 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 PRPF4BQ13523 1007 aaKnown RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 RASA3Q14644 834 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 PLS1Q14651 629 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 PSMD6Q15008 389 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 TMCO3Q6UWJ1 677 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 C4orf50Q6ZRC1 276 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 PARD3BQ8TEW8 1205 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 NOD1Q9Y239 953 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 SEMA3FQ13275 785 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 SPECC1Q5M775 1068 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 NANOGNBQ7Z5D8 188 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 RNF217Q8TC41 542 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 TRERF1Q96PN7 1200 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 SPINK5Q9NQ38 1064 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 SYF2O95926 243 aaKnown RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 RAP1GDS1P52306 607 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 CCDC170Q8IYT3 715 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 FAM212AQ96EL1 285 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 GAS8O95995 478 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 TSTA3Q13630 321 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 IQCGQ9H095 443 aaKnown RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 SPDYE16A6NNV3 312 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 HNRNPCL2B2RXH8 293 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 HNRNPCL1O60812 293 aaKnown RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 ARHGAP25P42331 645 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 SPDYE2Q495Y8 402 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 IQCEQ6IPM2 695 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 CCDC65Q8IXS2 484 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 MMRN2Q9H8L6 949 aa5.36□□□□□ -1.55
SCN1A-202ENST00000375405 RRP7AQ9Y3A4 280 aaKnown RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 C16orf45Q96MC5 204 aaPredicted RBP5.36□□□□□ -1.55
SCN1A-202ENST00000375405 EIF3AQ14152 1382 aaKnown RBP5.35□□□□□ -1.55
SCN1A-202ENST00000375405 ERICH4A6NGS2 130 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms