RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 BTBD11A6QL63 1104 aa17.34■□□□□ 0.37
CHD4-201ENST00000357008 TMEM132AQ24JP5 1023 aa17.34■□□□□ 0.37
CHD4-201ENST00000357008 SHTN1A0MZ66 631 aa17.34■□□□□ 0.37
CHD4-201ENST00000357008 SMARCA5O60264 1052 aaPredicted RBP17.34■□□□□ 0.37
CHD4-201ENST00000357008 MCM3P25205 808 aa17.34■□□□□ 0.37
CHD4-201ENST00000357008 RRS1Q15050 365 aaKnown RBP17.34■□□□□ 0.37
CHD4-201ENST00000357008 TOP1P11387 765 aaKnown RBP17.33■□□□□ 0.37
CHD4-201ENST00000357008 CASQ1P31415 396 aa17.33■□□□□ 0.37
CHD4-201ENST00000357008 NAIPQ13075 1403 aa17.33■□□□□ 0.37
CHD4-201ENST00000357008 CALCOCO1Q9P1Z2 691 aa17.33■□□□□ 0.37
CHD4-201ENST00000357008 ANKRD62A6NC57 917 aa17.33■□□□□ 0.36
CHD4-201ENST00000357008 DUSP27Q5VZP5 1158 aa17.33■□□□□ 0.36
CHD4-201ENST00000357008 DDX19AQ9NUU7 478 aaKnown RBP17.33■□□□□ 0.36
CHD4-201ENST00000357008 GRIN2BQ13224 1484 aa17.33■□□□□ 0.36
CHD4-201ENST00000357008 PRDM10Q9NQV6 1147 aa17.33■□□□□ 0.36
CHD4-201ENST00000357008 DHX29Q7Z478 1369 aaKnown RBP17.32■□□□□ 0.36
CHD4-201ENST00000357008 KIF4BQ2VIQ3 1234 aa17.32■□□□□ 0.36
CHD4-201ENST00000357008 INCENPQ9NQS7 918 aa17.32■□□□□ 0.36
CHD4-201ENST00000357008 SSBP05455 408 aaKnown RBP eCLIP17.32■□□□□ 0.36
CHD4-201ENST00000357008 ATP2B2Q01814 1243 aa17.32■□□□□ 0.36
CHD4-201ENST00000357008 SPA17Q15506 151 aa17.32■□□□□ 0.36
CHD4-201ENST00000357008 JAKMIP3Q5VZ66 844 aa17.31■□□□□ 0.36
CHD4-201ENST00000357008 HMGB1P09429 215 aaKnown RBP17.31■□□□□ 0.36
CHD4-201ENST00000357008 GNAT3A8MTJ3 354 aa17.31■□□□□ 0.36
CHD4-201ENST00000357008 GSDMDP57764 484 aa17.31■□□□□ 0.36
CHD4-201ENST00000357008 EZRP15311 586 aaKnown RBP17.3■□□□□ 0.36
CHD4-201ENST00000357008 KLHL40Q2TBA0 621 aa17.3■□□□□ 0.36
CHD4-201ENST00000357008 UVSSAQ2YD98 709 aa17.3■□□□□ 0.36
CHD4-201ENST00000357008 BMP2KLQ5H9B9 411 aa17.3■□□□□ 0.36
CHD4-201ENST00000357008 PRKCSHP14314 528 aaPredicted RBP17.3■□□□□ 0.36
CHD4-201ENST00000357008 C11orf95C9JLR9 678 aaPredicted RBP17.3■□□□□ 0.36
CHD4-201ENST00000357008 SEPT11Q9NVA2 429 aaKnown RBP17.3■□□□□ 0.36
CHD4-201ENST00000357008 BAG4O95429 457 aaKnown RBP17.3■□□□□ 0.36
CHD4-201ENST00000357008 WWC2Q6AWC2 1192 aa17.3■□□□□ 0.36
CHD4-201ENST00000357008 PODXL2Q9NZ53 605 aa17.3■□□□□ 0.36
CHD4-201ENST00000357008 SYNJ1O43426 1573 aa17.3■□□□□ 0.36
CHD4-201ENST00000357008 PRG4Q92954 1404 aaPredicted RBP17.3■□□□□ 0.36
CHD4-201ENST00000357008 DYNC1I1O14576 645 aa17.29■□□□□ 0.36
CHD4-201ENST00000357008 AIDAQ96BJ3 306 aa17.29■□□□□ 0.36
CHD4-201ENST00000357008 C8orf76Q96K31 380 aa17.29■□□□□ 0.36
CHD4-201ENST00000357008 C16orf45Q96MC5 204 aaPredicted RBP17.29■□□□□ 0.36
CHD4-201ENST00000357008 TBC1D32Q96NH3 1257 aa17.29■□□□□ 0.36
CHD4-201ENST00000357008 THUMPD2Q9BTF0 503 aaKnown RBP17.29■□□□□ 0.36
CHD4-201ENST00000357008 IDH1O75874 414 aaKnown RBP17.29■□□□□ 0.36
CHD4-201ENST00000357008 CKAP2LQ8IYA6 745 aa17.29■□□□□ 0.36
CHD4-201ENST00000357008 ADCY5O95622 1261 aa17.28■□□□□ 0.36
CHD4-201ENST00000357008 PRIMPOLQ96LW4 560 aa17.28■□□□□ 0.36
CHD4-201ENST00000357008 HECW1Q76N89 1606 aa17.28■□□□□ 0.36
CHD4-201ENST00000357008 SUPT6HQ7KZ85 1726 aaKnown RBP17.28■□□□□ 0.36
CHD4-201ENST00000357008 LRP2BPQ9P2M1 347 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 CCDC196A0A1B0GTZ2 297 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 GBP2P32456 591 aaPredicted RBP17.27■□□□□ 0.36
CHD4-201ENST00000357008 FKBP15Q5T1M5 1219 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 RAI14Q9P0K7 980 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 NCAPD3P42695 1498 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 CAVIN2O95810 425 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 TRIM27P14373 513 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 TBC1D9Q6ZT07 1266 aa17.27■□□□□ 0.36
CHD4-201ENST00000357008 BOLA2Q9H3K6 86 aa17.27■□□□□ 0.35
CHD4-201ENST00000357008 TRMT1Q9NXH9 659 aaKnown RBP17.27■□□□□ 0.35
CHD4-201ENST00000357008 AKAP2Q9Y2D5 859 aa17.27■□□□□ 0.35
CHD4-201ENST00000357008 POTEB2H3BUK9 544 aa17.27■□□□□ 0.35
CHD4-201ENST00000357008 PHAXQ9H814 394 aaKnown RBP17.27■□□□□ 0.35
CHD4-201ENST00000357008 KLHL10Q6JEL2 608 aa17.26■□□□□ 0.35
CHD4-201ENST00000357008 MCM10Q7L590 875 aa17.26■□□□□ 0.35
CHD4-201ENST00000357008 GIMAP7Q8NHV1 300 aa17.26■□□□□ 0.35
CHD4-201ENST00000357008 FAM107BQ9H098 131 aa17.26■□□□□ 0.35
CHD4-201ENST00000357008 STX6O43752 255 aa17.26■□□□□ 0.35
CHD4-201ENST00000357008 MEX3CQ5U5Q3 659 aaKnown RBP17.26■□□□□ 0.35
CHD4-201ENST00000357008 STX1AQ16623 288 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 PPP4R3BQ5MIZ7 849 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 MIS18AQ9NYP9 233 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 CCDC61Q9Y6R9 512 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 POLR3GO15318 223 aaPredicted RBP17.25■□□□□ 0.35
CHD4-201ENST00000357008 LARP1Q6PKG0 1096 aaKnown RBP17.25■□□□□ 0.35
CHD4-201ENST00000357008 PROSER2Q86WR7 435 aaPredicted RBP17.25■□□□□ 0.35
CHD4-201ENST00000357008 GOLGA6L9A6NEM1 432 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 STRN4Q9NRL3 753 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 UBE2HP62256 183 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 FSIP1Q8NA03 581 aa17.25■□□□□ 0.35
CHD4-201ENST00000357008 PAFAH1B1P43034 410 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 NCOA1Q15788 1441 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 TOM1L2Q6ZVM7 507 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 DDX54Q8TDD1 881 aaKnown RBP17.24■□□□□ 0.35
CHD4-201ENST00000357008 GDPD2Q9HCC8 539 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 PPP1R12BO60237 982 aaPredicted RBP17.24■□□□□ 0.35
CHD4-201ENST00000357008 PAXBP1Q9Y5B6 917 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 CLCN1P35523 988 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 ZNF165P49910 485 aa17.24■□□□□ 0.35
CHD4-201ENST00000357008 SLC26A8Q96RN1 970 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 USO1O60763 962 aaKnown RBP17.23■□□□□ 0.35
CHD4-201ENST00000357008 CNNM3Q8NE01 707 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 PTPRCP08575 1304 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 YEATS4O95619 227 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 GJB2P29033 226 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 MAP2K1Q02750 393 aaPredicted RBP17.23■□□□□ 0.35
CHD4-201ENST00000357008 BMS1Q14692 1282 aaKnown RBP17.23■□□□□ 0.35
CHD4-201ENST00000357008 LUZP1Q86V48 1076 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 DYDC1Q8WWB3 177 aa17.23■□□□□ 0.35
CHD4-201ENST00000357008 ZSCAN23Q3MJ62 389 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms