RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 STXBP4Q6ZWJ1 553 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 KLHL34Q8N239 644 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 TOP1P11387 765 aaKnown RBP17.94■□□□□ 0.46
HCFC1-201ENST00000310441 TATP17735 454 aaPredicted RBP17.94■□□□□ 0.46
HCFC1-201ENST00000310441 STMN4Q9H169 189 aaPredicted RBP17.94■□□□□ 0.46
HCFC1-201ENST00000310441 AKAP2Q9Y2D5 859 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 RAB11FIP3O75154 756 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 CTR9Q6PD62 1173 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 SPG7Q9UQ90 795 aa17.94■□□□□ 0.46
HCFC1-201ENST00000310441 CEP112Q8N8E3 955 aa17.93■□□□□ 0.46
HCFC1-201ENST00000310441 TTC12Q9H892 705 aaPredicted RBP17.93■□□□□ 0.46
HCFC1-201ENST00000310441 TMOD2Q9NZR1 351 aa17.93■□□□□ 0.46
HCFC1-201ENST00000310441 CHD1LQ86WJ1 897 aa17.93■□□□□ 0.46
HCFC1-201ENST00000310441 NSRP1Q9H0G5 558 aaKnown RBP17.93■□□□□ 0.46
HCFC1-201ENST00000310441 A0A087WZG4 1122 aa17.93■□□□□ 0.46
HCFC1-201ENST00000310441 ANKRD50Q9ULJ7 1429 aa17.93■□□□□ 0.46
HCFC1-201ENST00000310441 GOLIM4O00461 696 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 NOB1Q9ULX3 412 aaKnown RBP17.92■□□□□ 0.46
HCFC1-201ENST00000310441 SSX2IPQ9Y2D8 614 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 AMPD3Q01432 767 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 NUP88Q99567 741 aaPredicted RBP17.92■□□□□ 0.46
HCFC1-201ENST00000310441 IVLP07476 585 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 NLRP6P59044 892 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 STK3Q13188 491 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 CASTP20810 708 aaKnown RBP17.92■□□□□ 0.46
HCFC1-201ENST00000310441 DAAM2Q86T65 1068 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 CCDC12Q8WUD4 166 aaPredicted RBP17.92■□□□□ 0.46
HCFC1-201ENST00000310441 PDZRN3Q9UPQ7 1066 aa17.92■□□□□ 0.46
HCFC1-201ENST00000310441 SPECC1Q5M775 1068 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 KANK3Q6NY19 840 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 AACSQ86V21 672 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 RBM5P52756 815 aaKnown RBP eCLIP17.91■□□□□ 0.461e-6■□□□□ 10
HCFC1-201ENST00000310441 ATF7IPQ6VMQ6 1270 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 GAPVD1Q14C86 1478 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 MVPQ14764 893 aaKnown RBP17.91■□□□□ 0.46
HCFC1-201ENST00000310441 PIBF1Q8WXW3 757 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 PAXBP1Q9Y5B6 917 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 MTHFSP49914 203 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 FKBP4Q02790 459 aaKnown RBP eCLIP17.91■□□□□ 0.46
HCFC1-201ENST00000310441 AIDAQ96BJ3 306 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 SLF2Q8IX21 1173 aa17.91■□□□□ 0.46
HCFC1-201ENST00000310441 DDX46Q7L014 1031 aaKnown RBP17.9■□□□□ 0.46
HCFC1-201ENST00000310441 ZNF692Q9BU19 519 aaPredicted RBP17.9■□□□□ 0.46
HCFC1-201ENST00000310441 UBE4AQ14139 1066 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 TCP11L2Q8N4U5 519 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 ZNF652Q9Y2D9 606 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 CADPSQ9ULU8 1353 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 KIF4BQ2VIQ3 1234 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 ZWINTO95229 277 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 CUL5Q93034 780 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 IGHMBP2P38935 993 aaKnown RBP17.9■□□□□ 0.46
HCFC1-201ENST00000310441 LRRC9Q6ZRR7 1453 aa17.9■□□□□ 0.46
HCFC1-201ENST00000310441 ACTN2P35609 894 aa17.89■□□□□ 0.46
HCFC1-201ENST00000310441 FERMT2Q96AC1 680 aa17.89■□□□□ 0.46
HCFC1-201ENST00000310441 COMMD10Q9Y6G5 202 aa17.89■□□□□ 0.46
HCFC1-201ENST00000310441 SF3B2Q13435 895 aaKnown RBP17.89■□□□□ 0.45
HCFC1-201ENST00000310441 SMARCC1Q92922 1105 aaPredicted RBP17.89■□□□□ 0.45
HCFC1-201ENST00000310441 LRRC27Q9C0I9 530 aa17.89■□□□□ 0.45
HCFC1-201ENST00000310441 CABP4P57796 275 aa17.89■□□□□ 0.45
HCFC1-201ENST00000310441 JAKMIP1Q96N16 626 aaKnown RBP17.89■□□□□ 0.45
HCFC1-201ENST00000310441 SLC4A2P04920 1241 aa17.89■□□□□ 0.45
HCFC1-201ENST00000310441 LRP2BPQ9P2M1 347 aa17.89■□□□□ 0.45
HCFC1-201ENST00000310441 HSPA4P34932 840 aa17.89■□□□□ 0.45
HCFC1-201ENST00000310441 PRPHP41219 470 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 DRC1Q96MC2 740 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 DHX29Q7Z478 1369 aaKnown RBP17.88■□□□□ 0.45
HCFC1-201ENST00000310441 CKAP4Q07065 602 aaKnown RBP17.88■□□□□ 0.45
HCFC1-201ENST00000310441 CEP126Q9P2H0 1117 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 BRPF3Q9ULD4 1205 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 KDM4AO75164 1064 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 STX1AQ16623 288 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 CTNNBL1Q8WYA6 563 aaPredicted RBP17.88■□□□□ 0.45
HCFC1-201ENST00000310441 MCM4P33991 863 aa17.88■□□□□ 0.45
HCFC1-201ENST00000310441 BMS1Q14692 1282 aaKnown RBP17.87■□□□□ 0.45
HCFC1-201ENST00000310441 RNF187Q5TA31 235 aaPredicted RBP17.87■□□□□ 0.45
HCFC1-201ENST00000310441 USP37Q86T82 979 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 TTC14Q96N46 770 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 CLIP2Q9UDT6 1046 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 MPHOSPH6Q99547 160 aaKnown RBP17.87■□□□□ 0.45
HCFC1-201ENST00000310441 FANCD2Q9BXW9 1451 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 CCDC155Q8N6L0 562 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 RNF41Q9H4P4 317 aaPredicted RBP17.87■□□□□ 0.45
HCFC1-201ENST00000310441 TICAM2Q86XR7 235 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 BACH2Q9BYV9 841 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 RASAL2Q9UJF2 1139 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP17.87■□□□□ 0.45
HCFC1-201ENST00000310441 PRKAR2BP31323 418 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 RAI14Q9P0K7 980 aa17.87■□□□□ 0.45
HCFC1-201ENST00000310441 SYCE3A1L190 88 aa17.86■□□□□ 0.45
HCFC1-201ENST00000310441 PPP1R14CQ8TAE6 165 aa17.86■□□□□ 0.45
HCFC1-201ENST00000310441 SYNJ2O15056 1496 aa17.86■□□□□ 0.45
HCFC1-201ENST00000310441 SEPT6Q14141 434 aa17.85■□□□□ 0.45
HCFC1-201ENST00000310441 HLTFQ14527 1009 aaKnown RBP eCLIP17.85■□□□□ 0.45
HCFC1-201ENST00000310441 RAB3IL1Q8TBN0 382 aa17.85■□□□□ 0.45
HCFC1-201ENST00000310441 TUBB4AP04350 444 aa17.85■□□□□ 0.45
HCFC1-201ENST00000310441 DYNC1I1O14576 645 aa17.85■□□□□ 0.45
HCFC1-201ENST00000310441 SRGAP3O43295 1099 aa17.85■□□□□ 0.45
HCFC1-201ENST00000310441 CTCFLQ8NI51 663 aaPredicted RBP17.85■□□□□ 0.45
HCFC1-201ENST00000310441 ADAMTS8Q9UP79 889 aa17.85■□□□□ 0.45
HCFC1-201ENST00000310441 CFAP65Q6ZU64 1925 aaKnown RBP17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms