RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 NUTM2EB1AL46 878 aaPredicted RBP18.05■□□□□ 0.48
SS18-201ENST00000269137 RLBP1P12271 317 aa18.05■□□□□ 0.48
SS18-201ENST00000269137 NUTM2AQ8IVF1 878 aaPredicted RBP18.05■□□□□ 0.48
SS18-201ENST00000269137 DZIP1LQ8IYY4 767 aaKnown RBP18.05■□□□□ 0.48
SS18-201ENST00000269137 AAMPQ13685 434 aa18.04■□□□□ 0.48
SS18-201ENST00000269137 NRAPQ86VF7 1730 aa18.04■□□□□ 0.48
SS18-201ENST00000269137 NWD2Q9ULI1 1742 aa18.04■□□□□ 0.48
SS18-201ENST00000269137 DISP2A7MBM2 1401 aa18.03■□□□□ 0.48
SS18-201ENST00000269137 MRC1P22897 1456 aa18.03■□□□□ 0.48
SS18-201ENST00000269137 EIF4A1P60842 406 aaKnown RBP18.03■□□□□ 0.48
SS18-201ENST00000269137 NKX1-1Q15270 411 aaPredicted RBP18.03■□□□□ 0.48
SS18-201ENST00000269137 SLC52A2Q9HAB3 445 aa18.03■□□□□ 0.48
SS18-201ENST00000269137 TNNQ9UQP3 1299 aa18.03■□□□□ 0.48
SS18-201ENST00000269137 SLIT2O94813 1529 aa18.03■□□□□ 0.48
SS18-201ENST00000269137 HOXB7P09629 217 aa18.02■□□□□ 0.48
SS18-201ENST00000269137 FTSJ3Q8IY81 847 aaKnown RBP18.02■□□□□ 0.48
SS18-201ENST00000269137 COG6Q9Y2V7 657 aa18.02■□□□□ 0.48
SS18-201ENST00000269137 SPATA31A6Q5VVP1 1343 aa18.02■□□□□ 0.48
SS18-201ENST00000269137 SHANK3Q9BYB0 1731 aa18.01■□□□□ 0.47
SS18-201ENST00000269137 CLUAP1Q96AJ1 413 aa18.01■□□□□ 0.47
SS18-201ENST00000269137 CHMP4AQ9BY43 222 aa18.01■□□□□ 0.47
SS18-201ENST00000269137 USP35Q9P2H5 1018 aa18.01■□□□□ 0.47
SS18-201ENST00000269137 CACNA1FO60840 1977 aa18■□□□□ 0.47
SS18-201ENST00000269137 TCERG1O14776 1098 aaKnown RBP18■□□□□ 0.47
SS18-201ENST00000269137 MVPQ14764 893 aaKnown RBP18■□□□□ 0.47
SS18-201ENST00000269137 THRAP3Q9Y2W1 955 aaKnown RBP18■□□□□ 0.47
SS18-201ENST00000269137 KCNQ3O43525 872 aa18■□□□□ 0.47
SS18-201ENST00000269137 CCDC30Q5VVM6 783 aa18■□□□□ 0.47
SS18-201ENST00000269137 CDCA7Q9BWT1 371 aaPredicted RBP18■□□□□ 0.47
SS18-201ENST00000269137 HEG1Q9ULI3 1381 aa18■□□□□ 0.47
SS18-201ENST00000269137 SPATA31A1Q5TZJ5 1347 aa17.99■□□□□ 0.47
SS18-201ENST00000269137 NFATC2IPQ8NCF5 419 aa17.99■□□□□ 0.47
SS18-201ENST00000269137 API5Q9BZZ5 524 aaKnown RBP17.99■□□□□ 0.47
SS18-201ENST00000269137 ERVV-2B6SEH9 535 aa17.98■□□□□ 0.47
SS18-201ENST00000269137 PTPRCP08575 1304 aa17.98■□□□□ 0.47
SS18-201ENST00000269137 SLC4A2P04920 1241 aa17.98■□□□□ 0.47
SS18-201ENST00000269137 STK31Q9BXU1 1019 aa17.98■□□□□ 0.47
SS18-201ENST00000269137 WNK3Q9BYP7 1800 aa17.97■□□□□ 0.47
SS18-201ENST00000269137 SPATA31A5Q5VU36 1347 aa17.97■□□□□ 0.47
SS18-201ENST00000269137 SPATA31A7Q8IWB4 1347 aa17.97■□□□□ 0.47
SS18-201ENST00000269137 ZNF790Q6PG37 636 aa17.97■□□□□ 0.47
SS18-201ENST00000269137 ABCC4O15439 1325 aa17.96■□□□□ 0.47
SS18-201ENST00000269137 HSPA1LP34931 641 aa17.96■□□□□ 0.47
SS18-201ENST00000269137 CABP4P57796 275 aa17.96■□□□□ 0.47
SS18-201ENST00000269137 DDX54Q8TDD1 881 aaKnown RBP17.96■□□□□ 0.47
SS18-201ENST00000269137 DDX19BQ9UMR2 479 aa17.96■□□□□ 0.47
SS18-201ENST00000269137 UNC5CLQ8IV45 518 aa17.95■□□□□ 0.46
SS18-201ENST00000269137 FNBP4Q8N3X1 1017 aaPredicted RBP17.95■□□□□ 0.46
SS18-201ENST00000269137 TMEM57Q8N5G2 664 aa17.95■□□□□ 0.46
SS18-201ENST00000269137 GIGYF1O75420 1035 aaPredicted RBP17.95■□□□□ 0.46
SS18-201ENST00000269137 HDGFL1Q5TGJ6 251 aa17.95■□□□□ 0.46
SS18-201ENST00000269137 EXOC5O00471 708 aa17.94■□□□□ 0.46
SS18-201ENST00000269137 BARGINQ6ZT62 677 aa17.94■□□□□ 0.46
SS18-201ENST00000269137 NGLY1Q96IV0 654 aa17.94■□□□□ 0.46
SS18-201ENST00000269137 RGS12O14924 1447 aa17.93■□□□□ 0.46
SS18-201ENST00000269137 ITPRIPQ8IWB1 547 aa17.93■□□□□ 0.46
SS18-201ENST00000269137 LRP6O75581 1613 aa17.93■□□□□ 0.46
SS18-201ENST00000269137 BCL9LQ86UU0 1499 aa17.93■□□□□ 0.46
SS18-201ENST00000269137 TNS2Q63HR2 1409 aa17.93■□□□□ 0.46
SS18-201ENST00000269137 C8orf37Q96NL8 207 aa17.93■□□□□ 0.46
SS18-201ENST00000269137 SLC39A6Q13433 755 aa17.92■□□□□ 0.46
SS18-201ENST00000269137 VPS72Q15906 364 aa17.92■□□□□ 0.46
SS18-201ENST00000269137 CHMP4BQ9H444 224 aaKnown RBP17.92■□□□□ 0.46
SS18-201ENST00000269137 G2E3Q7L622 706 aa17.91■□□□□ 0.46
SS18-201ENST00000269137 KDM2BQ8NHM5 1336 aa17.91■□□□□ 0.46
SS18-201ENST00000269137 INTS3Q68E01 1043 aaKnown RBP17.91■□□□□ 0.46
SS18-201ENST00000269137 TTC5Q8N0Z6 440 aa17.91■□□□□ 0.46
SS18-201ENST00000269137 EIF2S2P20042 333 aaKnown RBP17.9■□□□□ 0.46
SS18-201ENST00000269137 FLIIQ13045 1269 aa17.9■□□□□ 0.46
SS18-201ENST00000269137 NECTIN2Q92692 538 aa17.9■□□□□ 0.46
SS18-201ENST00000269137 ZBTB40Q9NUA8 1239 aa17.9■□□□□ 0.46
SS18-201ENST00000269137 CENPQQ7L2Z9 268 aaPredicted RBP17.89■□□□□ 0.45
SS18-201ENST00000269137 ZNF496Q96IT1 587 aaPredicted RBP17.89■□□□□ 0.45
SS18-201ENST00000269137 FMNL2Q96PY5 1086 aa17.89■□□□□ 0.45
SS18-201ENST00000269137 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.89■□□□□ 0.45
SS18-201ENST00000269137 TOGARAM1Q9Y4F4 1720 aa17.89■□□□□ 0.45
SS18-201ENST00000269137 CCDC9Q9Y3X0 531 aaKnown RBP17.88■□□□□ 0.45
SS18-201ENST00000269137 ZBTB7BO15156 539 aaPredicted RBP17.88■□□□□ 0.45
SS18-201ENST00000269137 SNRPA1P09661 255 aaKnown RBP17.88■□□□□ 0.45
SS18-201ENST00000269137 DDB1Q16531 1140 aa17.88■□□□□ 0.45
SS18-201ENST00000269137 DBF4Q9UBU7 674 aaPredicted RBP17.88■□□□□ 0.45
SS18-201ENST00000269137 PAPPAQ13219 1627 aa17.88■□□□□ 0.45
SS18-201ENST00000269137 CHPF2Q9P2E5 772 aa17.87■□□□□ 0.45
SS18-201ENST00000269137 PCDHB15Q9Y5E8 787 aa17.87■□□□□ 0.45
SS18-201ENST00000269137 UBR2Q8IWV8 1755 aa17.87■□□□□ 0.45
SS18-201ENST00000269137 TMOD3Q9NYL9 352 aa17.86■□□□□ 0.45
SS18-201ENST00000269137 USP21Q9UK80 565 aa17.86■□□□□ 0.45
SS18-201ENST00000269137 PRAMEF22A3QJZ6 481 aa17.86■□□□□ 0.45
SS18-201ENST00000269137 FKBP5Q13451 457 aaPredicted RBP17.86■□□□□ 0.45
SS18-201ENST00000269137 CCT4P50991 539 aaKnown RBP17.85■□□□□ 0.45
SS18-201ENST00000269137 C5P01031 1676 aa17.85■□□□□ 0.45
SS18-201ENST00000269137 GLI3P10071 1580 aa17.84■□□□□ 0.45
SS18-201ENST00000269137 MEX3CQ5U5Q3 659 aaKnown RBP17.84■□□□□ 0.45
SS18-201ENST00000269137 DDX21Q9NR30 783 aaKnown RBP eCLIP17.84■□□□□ 0.45
SS18-201ENST00000269137 HYPKQ9NX55 129 aa17.84■□□□□ 0.45
SS18-201ENST00000269137 ITGB4P16144 1822 aa17.84■□□□□ 0.45
SS18-201ENST00000269137 PIGBQ92521 554 aa17.84■□□□□ 0.45
SS18-201ENST00000269137 PHAXQ9H814 394 aaKnown RBP17.84■□□□□ 0.45
SS18-201ENST00000269137 KCPQ6ZWJ8 1503 aa17.83■□□□□ 0.45
SS18-201ENST00000269137 IGHDP01880 384 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms