Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 MMP23A-201ENST00000234610 1017 ntBASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 SLC25A1P2-201ENST00000430693 912 ntBASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.77■□□□□ 0.44
ATG4BQ9Y4P1 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 GPAT2P1-201ENST00000444924 1672 ntBASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 AL138781.2-201ENST00000617896 1843 ntBASIC17.77■□□□□ 0.43
ATG4BQ9Y4P1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 AL023284.2-201ENST00000405850 579 ntBASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4BQ9Y4P1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 ANO7L1-203ENST00000602586 1720 ntBASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 AC087499.1-201ENST00000418141 1075 ntBASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 C2orf69P3-201ENST00000565542 1120 ntBASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 AC010947.1-201ENST00000623454 693 ntBASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.75■□□□□ 0.43
ATG4BQ9Y4P1 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 AL109659.2-201ENST00000606809 1674 ntBASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 AC008556.1-201ENST00000610908 2040 ntBASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 AC211429.1-201ENST00000415277 523 ntBASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 TSPY17P-201ENST00000450329 467 ntBASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 AL353719.1-201ENST00000566847 864 ntBASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 MIR4674-201ENST00000582457 87 ntBASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
ATG4BQ9Y4P1 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms