Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
COMMD3Q9UBI1 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 AC010536.3-201ENST00000620306 533 ntBASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COMMD3Q9UBI1 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COMMD3Q9UBI1 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
COMMD3Q9UBI1 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 AC012317.2-201ENST00000623305 2251 ntBASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 KRT19P1-201ENST00000405746 1186 ntBASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 RARRES2P4-201ENST00000514074 484 ntBASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 AC135776.1-201ENST00000319817 2481 ntBASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
COMMD3Q9UBI1 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms