Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SCN3AQ9NY46 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SCN3AQ9NY46 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 AL023973.1-201ENST00000624619 620 ntBASIC17.76■□□□□ 0.43
SCN3AQ9NY46 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 AC018445.3-201ENST00000624177 1945 ntBASIC17.76■□□□□ 0.43
SCN3AQ9NY46 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 AC008556.1-201ENST00000610908 2040 ntBASIC17.76■□□□□ 0.43
SCN3AQ9NY46 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.76■□□□□ 0.43
SCN3AQ9NY46 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.75■□□□□ 0.43
SCN3AQ9NY46 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 AC141257.4-201ENST00000634557 245 ntBASIC17.75■□□□□ 0.43
SCN3AQ9NY46 AC136944.6-201ENST00000634818 245 ntBASIC17.75■□□□□ 0.43
SCN3AQ9NY46 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SCN3AQ9NY46 RCC2P3-201ENST00000418112 1537 ntBASIC17.75■□□□□ 0.43
SCN3AQ9NY46 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 AC117947.1-201ENST00000427448 529 ntBASIC17.74■□□□□ 0.43
SCN3AQ9NY46 AC010203.1-204ENST00000548782 407 ntBASIC17.74■□□□□ 0.43
SCN3AQ9NY46 FAM87A-204ENST00000613235 858 ntBASIC17.74■□□□□ 0.43
SCN3AQ9NY46 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SCN3AQ9NY46 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms