Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TDP1Q9NUW8 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TDP1Q9NUW8 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TDP1Q9NUW8 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TDP1Q9NUW8 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.33■□□□□ 0.69
TDP1Q9NUW8 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TDP1Q9NUW8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 KRT8P26-201ENST00000534154 1276 ntBASIC19.33■□□□□ 0.68
TDP1Q9NUW8 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TDP1Q9NUW8 AC034236.2-201ENST00000606662 1610 ntBASIC19.33■□□□□ 0.68
TDP1Q9NUW8 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 AC093525.10-201ENST00000625130 1569 ntBASIC19.32■□□□□ 0.68
TDP1Q9NUW8 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 SLC25A24-204ENST00000569674 2357 ntBASIC19.32■□□□□ 0.68
TDP1Q9NUW8 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TDP1Q9NUW8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 AC012313.10-201ENST00000623509 926 ntBASIC19.31■□□□□ 0.68
TDP1Q9NUW8 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 AC073130.3-201ENST00000624389 2278 ntBASIC19.31■□□□□ 0.68
TDP1Q9NUW8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
TDP1Q9NUW8 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 AC006333.2-201ENST00000607957 2099 ntBASIC19.3■□□□□ 0.68
TDP1Q9NUW8 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 MIR3652-201ENST00000579335 131 ntBASIC19.3■□□□□ 0.68
TDP1Q9NUW8 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.3■□□□□ 0.68
TDP1Q9NUW8 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms