Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
PCDH9Q9HC56 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.42■□□□□ 0.7
PCDH9Q9HC56 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 AC073592.3-201ENST00000625118 1834 ntBASIC19.42■□□□□ 0.7
PCDH9Q9HC56 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 Z85996.1-201ENST00000494644 937 ntBASIC19.42■□□□□ 0.7
PCDH9Q9HC56 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 HEIH-201ENST00000623091 1652 ntBASIC19.42■□□□□ 0.7
PCDH9Q9HC56 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
PCDH9Q9HC56 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 AC026271.3-201ENST00000571884 352 ntBASIC19.41■□□□□ 0.7
PCDH9Q9HC56 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 AC066615.1-201ENST00000640911 628 ntBASIC19.41■□□□□ 0.7
PCDH9Q9HC56 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.41■□□□□ 0.7
PCDH9Q9HC56 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 RCC2P6-201ENST00000526625 1557 ntBASIC19.4■□□□□ 0.7
PCDH9Q9HC56 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 AC020763.4-201ENST00000623414 4170 ntBASIC19.4■□□□□ 0.7
PCDH9Q9HC56 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.4■□□□□ 0.7
PCDH9Q9HC56 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PCDH9Q9HC56 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
PCDH9Q9HC56 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms