Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 CD99-202ENST00000381180 530 ntTSL 2 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TTC28Q96AY4 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
TTC28Q96AY4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 NOP2-220ENST00000545915 630 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 SMG8-203ENST00000578922 2178 ntBASIC19.05■□□□□ 0.64
TTC28Q96AY4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 HEIH-201ENST00000623091 1652 ntBASIC19.05■□□□□ 0.64
TTC28Q96AY4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TTC28Q96AY4 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.05■□□□□ 0.64
TTC28Q96AY4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.04■□□□□ 0.64
TTC28Q96AY4 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TTC28Q96AY4 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TTC28Q96AY4 AP002414.1-201ENST00000391405 1147 ntBASIC19.03■□□□□ 0.64
TTC28Q96AY4 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 AC092910.1-201ENST00000482027 1129 ntBASIC19.03■□□□□ 0.64
TTC28Q96AY4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 AC024563.2-201ENST00000603282 481 ntBASIC19.03■□□□□ 0.64
TTC28Q96AY4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 AC092865.6-201ENST00000642101 219 ntBASIC19.03■□□□□ 0.64
TTC28Q96AY4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
TTC28Q96AY4 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TTC28Q96AY4 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TTC28Q96AY4 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 RN7SL204P-201ENST00000582831 262 ntBASIC19.03■□□□□ 0.64
TTC28Q96AY4 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TTC28Q96AY4 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TTC28Q96AY4 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.03■□□□□ 0.64
TTC28Q96AY4 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 OR8S1-201ENST00000310194 1080 ntBASIC19.02■□□□□ 0.64
TTC28Q96AY4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.02■□□□□ 0.64
TTC28Q96AY4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TTC28Q96AY4 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.02■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms