Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 EMD-201ENST00000369835 966 ntTSL 3 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
RC3H1Q5TC82 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
RC3H1Q5TC82 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
RC3H1Q5TC82 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
RC3H1Q5TC82 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
RC3H1Q5TC82 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 NUS1P2-201ENST00000417358 873 ntBASIC23.64■■□□□ 1.37
RC3H1Q5TC82 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 AL773604.1-201ENST00000617417 272 ntBASIC23.64■■□□□ 1.37
RC3H1Q5TC82 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.64■■□□□ 1.37
RC3H1Q5TC82 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RC3H1Q5TC82 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 FAM197Y8-203ENST00000450145 560 ntBASIC23.62■■□□□ 1.37
RC3H1Q5TC82 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 MOK-208ENST00000519058 917 ntTSL 2 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 AC011840.4-201ENST00000578471 627 ntBASIC23.62■■□□□ 1.37
RC3H1Q5TC82 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC23.62■■□□□ 1.37
RC3H1Q5TC82 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 AC009065.1-201ENST00000564055 1225 ntBASIC23.61■■□□□ 1.37
RC3H1Q5TC82 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RC3H1Q5TC82 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 RPP21-221ENST00000428040 594 ntTSL 2 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 MINOS1P3-201ENST00000457048 203 ntBASIC23.6■■□□□ 1.37
RC3H1Q5TC82 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC23.6■■□□□ 1.37
RC3H1Q5TC82 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RC3H1Q5TC82 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms