Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SLC25A1P4-201ENST00000567977 778 ntBASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 DGCR10-201ENST00000609839 495 ntBASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 AC005363.2-201ENST00000618631 242 ntBASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PTCHD3Q3KNS1 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 AL138781.2-201ENST00000617896 1843 ntBASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD3Q3KNS1 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 TMPOP1-202ENST00000424642 1267 ntBASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 Z98044.1-201ENST00000632503 1764 ntBASIC18.35■□□□□ 0.53
PTCHD3Q3KNS1 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 KRT18P22-201ENST00000402024 1347 ntBASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 AC005521.1-201ENST00000393351 872 ntBASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
PTCHD3Q3KNS1 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms