Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
CLRN1P58418 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.8■□□□□ 0.28
CLRN1P58418 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CLRN1P58418 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.8■□□□□ 0.28
CLRN1P58418 AC008040.2-201ENST00000461049 708 ntBASIC16.8■□□□□ 0.28
CLRN1P58418 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.8■□□□□ 0.28
CLRN1P58418 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 CKBP1-201ENST00000565489 1086 ntBASIC16.8■□□□□ 0.28
CLRN1P58418 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CLRN1P58418 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC16.8■□□□□ 0.28
CLRN1P58418 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
CLRN1P58418 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CLRN1P58418 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CLRN1P58418 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
CLRN1P58418 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 Z98044.1-201ENST00000632503 1764 ntBASIC16.79■□□□□ 0.28
CLRN1P58418 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CLRN1P58418 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 MDFI-202ENST00000373050 809 ntTSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.79■□□□□ 0.28
CLRN1P58418 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.79■□□□□ 0.28
CLRN1P58418 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 AP006294.2-201ENST00000641667 209 ntBASIC16.79■□□□□ 0.28
CLRN1P58418 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC16.79■□□□□ 0.28
CLRN1P58418 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CLRN1P58418 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 OR6D1P-202ENST00000641007 5290 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
CLRN1P58418 AC093525.10-201ENST00000625130 1569 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
CLRN1P58418 MESTP1-201ENST00000404287 994 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.78■□□□□ 0.28
CLRN1P58418 AC008550.1-201ENST00000511500 884 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.78■□□□□ 0.28
CLRN1P58418 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.78■□□□□ 0.28
CLRN1P58418 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.78■□□□□ 0.28
CLRN1P58418 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.78■□□□□ 0.28
CLRN1P58418 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 SLC25A1P4-201ENST00000567977 778 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC16.78■□□□□ 0.28
CLRN1P58418 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 Z99916.2-201ENST00000604037 246 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 AP000692.2-201ENST00000608391 879 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 DGCR10-201ENST00000609839 495 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 AL512353.2-201ENST00000448759 1962 ntBASIC16.78■□□□□ 0.28
CLRN1P58418 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.78■□□□□ 0.28
CLRN1P58418 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
CLRN1P58418 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN1P58418 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.77■□□□□ 0.28
CLRN1P58418 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN1P58418 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN1P58418 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN1P58418 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
CLRN1P58418 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms