Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.62■□□□□ 0.73
HDAC4P56524 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.62■□□□□ 0.73
HDAC4P56524 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 MTMR9LP-203ENST00000426597 1545 ntBASIC19.61■□□□□ 0.73
HDAC4P56524 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
HDAC4P56524 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 KRT8P9-201ENST00000558927 1449 ntBASIC19.61■□□□□ 0.73
HDAC4P56524 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.61■□□□□ 0.73
HDAC4P56524 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
HDAC4P56524 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 AL023803.3-201ENST00000615559 522 ntBASIC19.61■□□□□ 0.73
HDAC4P56524 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.61■□□□□ 0.73
HDAC4P56524 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
HDAC4P56524 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.61■□□□□ 0.73
HDAC4P56524 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
HDAC4P56524 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.6■□□□□ 0.73
HDAC4P56524 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.6■□□□□ 0.73
HDAC4P56524 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.6■□□□□ 0.73
HDAC4P56524 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.6■□□□□ 0.73
HDAC4P56524 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 Z98044.1-201ENST00000632503 1764 ntBASIC19.6■□□□□ 0.73
HDAC4P56524 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC19.6■□□□□ 0.73
HDAC4P56524 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.6■□□□□ 0.73
HDAC4P56524 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC19.6■□□□□ 0.73
HDAC4P56524 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
HDAC4P56524 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.6■□□□□ 0.73
HDAC4P56524 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.6■□□□□ 0.73
HDAC4P56524 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.6■□□□□ 0.73
HDAC4P56524 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.6■□□□□ 0.73
HDAC4P56524 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.6■□□□□ 0.73
HDAC4P56524 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.6■□□□□ 0.73
HDAC4P56524 RCC2P3-201ENST00000418112 1537 ntBASIC19.6■□□□□ 0.73
HDAC4P56524 AL138781.2-201ENST00000617896 1843 ntBASIC19.6■□□□□ 0.73
HDAC4P56524 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.6■□□□□ 0.73
HDAC4P56524 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
HDAC4P56524 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.59■□□□□ 0.73
HDAC4P56524 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
HDAC4P56524 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.59■□□□□ 0.73
HDAC4P56524 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.59■□□□□ 0.73
HDAC4P56524 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HDAC4P56524 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.59■□□□□ 0.73
HDAC4P56524 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.59■□□□□ 0.73
HDAC4P56524 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.59■□□□□ 0.73
HDAC4P56524 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.59■□□□□ 0.73
HDAC4P56524 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
HDAC4P56524 CYP2D8P-201ENST00000433633 1490 ntBASIC19.59■□□□□ 0.73
HDAC4P56524 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.59■□□□□ 0.73
HDAC4P56524 GPAT2P1-201ENST00000444924 1672 ntBASIC19.59■□□□□ 0.73
HDAC4P56524 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.59■□□□□ 0.73
HDAC4P56524 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HDAC4P56524 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDAC4P56524 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.58■□□□□ 0.73
HDAC4P56524 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDAC4P56524 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.58■□□□□ 0.73
HDAC4P56524 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.58■□□□□ 0.73
HDAC4P56524 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDAC4P56524 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.58■□□□□ 0.73
HDAC4P56524 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDAC4P56524 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HDAC4P56524 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
HDAC4P56524 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.58■□□□□ 0.72
HDAC4P56524 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.58■□□□□ 0.72
HDAC4P56524 SLC25A1P2-201ENST00000430693 912 ntBASIC19.58■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms