Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
HMGCS2P54868 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HMGCS2P54868 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.69■■□□□ 1.06
HMGCS2P54868 PVRIG2P-201ENST00000435460 978 ntBASIC21.69■■□□□ 1.06
HMGCS2P54868 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGCS2P54868 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.69■■□□□ 1.06
HMGCS2P54868 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC21.69■■□□□ 1.06
HMGCS2P54868 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGCS2P54868 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGCS2P54868 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGCS2P54868 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 KRT8P32-201ENST00000512863 1461 ntBASIC21.69■■□□□ 1.06
HMGCS2P54868 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 FEM1AP3-201ENST00000403722 1741 ntBASIC21.69■■□□□ 1.06
HMGCS2P54868 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
HMGCS2P54868 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGCS2P54868 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC21.68■■□□□ 1.06
HMGCS2P54868 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 AP000347.1-202ENST00000435868 847 ntBASIC21.68■■□□□ 1.06
HMGCS2P54868 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGCS2P54868 AC009078.2-202ENST00000463353 338 ntBASIC21.68■■□□□ 1.06
HMGCS2P54868 AP003733.1-201ENST00000491725 852 ntBASIC21.68■■□□□ 1.06
HMGCS2P54868 AC012615.1-201ENST00000565797 1299 ntBASIC21.68■■□□□ 1.06
HMGCS2P54868 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGCS2P54868 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGCS2P54868 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC21.68■■□□□ 1.06
HMGCS2P54868 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGCS2P54868 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HMGCS2P54868 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGCS2P54868 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGCS2P54868 LINC01521-201ENST00000504184 1943 ntBASIC21.68■■□□□ 1.06
HMGCS2P54868 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGCS2P54868 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGCS2P54868 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGCS2P54868 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
HMGCS2P54868 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.67■■□□□ 1.06
HMGCS2P54868 IRX1P1-201ENST00000438849 1838 ntBASIC21.67■■□□□ 1.06
HMGCS2P54868 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.67■■□□□ 1.06
HMGCS2P54868 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
HMGCS2P54868 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGCS2P54868 AC091304.2-201ENST00000564639 760 ntBASIC21.67■■□□□ 1.06
HMGCS2P54868 AL390719.2-201ENST00000606993 987 ntBASIC21.67■■□□□ 1.06
HMGCS2P54868 AL121772.3-201ENST00000610840 674 ntBASIC21.67■■□□□ 1.06
HMGCS2P54868 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.67■■□□□ 1.06
HMGCS2P54868 AL031008.1-201ENST00000619963 541 ntBASIC21.67■■□□□ 1.06
HMGCS2P54868 AC006333.2-201ENST00000607957 2099 ntBASIC21.67■■□□□ 1.06
HMGCS2P54868 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
HMGCS2P54868 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
HMGCS2P54868 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 PBK-203ENST00000522944 1499 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGCS2P54868 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
HMGCS2P54868 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGCS2P54868 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGCS2P54868 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGCS2P54868 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC21.66■■□□□ 1.06
HMGCS2P54868 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.66■■□□□ 1.06
HMGCS2P54868 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC21.66■■□□□ 1.06
HMGCS2P54868 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
HMGCS2P54868 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 UBQLN4P1-201ENST00000461599 1801 ntBASIC21.65■■□□□ 1.06
HMGCS2P54868 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
HMGCS2P54868 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC21.65■■□□□ 1.06
HMGCS2P54868 KRT18P31-201ENST00000506277 1292 ntBASIC21.65■■□□□ 1.06
HMGCS2P54868 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.65■■□□□ 1.06
HMGCS2P54868 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms