Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.67■□□□□ 0.42
RFX3P48380 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
RFX3P48380 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
RFX3P48380 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
RFX3P48380 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX3P48380 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 MIR718-201ENST00000390190 70 ntBASIC17.66■□□□□ 0.42
RFX3P48380 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX3P48380 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
RFX3P48380 AC004951.3-201ENST00000418645 1148 ntBASIC17.66■□□□□ 0.42
RFX3P48380 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX3P48380 AC012618.2-201ENST00000428058 849 ntBASIC17.66■□□□□ 0.42
RFX3P48380 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.66■□□□□ 0.42
RFX3P48380 TSPY23P-201ENST00000440136 739 ntBASIC17.66■□□□□ 0.42
RFX3P48380 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.66■□□□□ 0.42
RFX3P48380 PENK-204ENST00000518770 863 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX3P48380 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.66■□□□□ 0.42
RFX3P48380 AC113410.3-201ENST00000623366 203 ntBASIC17.66■□□□□ 0.42
RFX3P48380 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.66■□□□□ 0.42
RFX3P48380 AL049637.2-201ENST00000641778 930 ntBASIC17.66■□□□□ 0.42
RFX3P48380 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX3P48380 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC17.66■□□□□ 0.42
RFX3P48380 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
RFX3P48380 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
RFX3P48380 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 TSPY21P-201ENST00000433481 731 ntBASIC17.65■□□□□ 0.42
RFX3P48380 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
RFX3P48380 AC233702.5-201ENST00000584107 538 ntBASIC17.65■□□□□ 0.42
RFX3P48380 DECR2-212ENST00000627716 352 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 FP475955.4-201ENST00000623131 1990 ntBASIC17.65■□□□□ 0.42
RFX3P48380 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.65■□□□□ 0.42
RFX3P48380 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.65■□□□□ 0.42
RFX3P48380 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
RFX3P48380 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
RFX3P48380 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.42
RFX3P48380 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
RFX3P48380 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
RFX3P48380 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.42
RFX3P48380 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
RFX3P48380 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.64■□□□□ 0.41
RFX3P48380 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.64■□□□□ 0.41
RFX3P48380 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 AL355355.2-201ENST00000442321 338 ntBASIC17.64■□□□□ 0.41
RFX3P48380 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.64■□□□□ 0.41
RFX3P48380 AC091390.4-202ENST00000476426 537 ntBASIC17.64■□□□□ 0.41
RFX3P48380 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.64■□□□□ 0.41
RFX3P48380 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.64■□□□□ 0.41
RFX3P48380 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 MIR6786-201ENST00000616843 113 ntBASIC17.64■□□□□ 0.41
RFX3P48380 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.64■□□□□ 0.41
RFX3P48380 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RFX3P48380 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms