Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 FEM1AP3-201ENST00000403722 1741 ntBASIC14.54□□□□□ -0.08
HOXD3P31249 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 AC005332.7-201ENST00000614046 2005 ntBASIC14.54□□□□□ -0.08
HOXD3P31249 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC14.54□□□□□ -0.08
HOXD3P31249 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
HOXD3P31249 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 FP475955.4-201ENST00000623131 1990 ntBASIC14.53□□□□□ -0.08
HOXD3P31249 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
HOXD3P31249 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 BUB3-202ENST00000368859 667 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD3P31249 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
HOXD3P31249 PCED1CP-201ENST00000419887 785 ntBASIC14.53□□□□□ -0.08
HOXD3P31249 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
HOXD3P31249 GXYLT1P6-201ENST00000456472 1187 ntBASIC14.53□□□□□ -0.08
HOXD3P31249 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD3P31249 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.53□□□□□ -0.08
HOXD3P31249 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD3P31249 AP003041.3-201ENST00000527151 707 ntBASIC14.53□□□□□ -0.08
HOXD3P31249 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.53□□□□□ -0.08
HOXD3P31249 DBP-204ENST00000599385 709 ntTSL 3 BASIC14.53□□□□□ -0.08
HOXD3P31249 AL121894.2-201ENST00000602977 491 ntBASIC14.53□□□□□ -0.08
HOXD3P31249 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 AP000550.4-202ENST00000639755 178 ntBASIC14.53□□□□□ -0.08
HOXD3P31249 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
HOXD3P31249 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
HOXD3P31249 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD3P31249 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD3P31249 UBQLN4P1-201ENST00000461599 1801 ntBASIC14.52□□□□□ -0.08
HOXD3P31249 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC14.52□□□□□ -0.08
HOXD3P31249 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HOXD3P31249 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD3P31249 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD3P31249 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
HOXD3P31249 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
HOXD3P31249 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD3P31249 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD3P31249 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD3P31249 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.52□□□□□ -0.08
HOXD3P31249 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD3P31249 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
HOXD3P31249 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXD3P31249 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXD3P31249 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.52□□□□□ -0.09
HOXD3P31249 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC14.52□□□□□ -0.09
HOXD3P31249 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC14.52□□□□□ -0.09
HOXD3P31249 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
HOXD3P31249 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC14.52□□□□□ -0.09
HOXD3P31249 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
HOXD3P31249 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
HOXD3P31249 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
HOXD3P31249 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC14.51□□□□□ -0.09
HOXD3P31249 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
HOXD3P31249 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXD3P31249 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC14.51□□□□□ -0.09
HOXD3P31249 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HOXD3P31249 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
HOXD3P31249 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
HOXD3P31249 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.51□□□□□ -0.09
HOXD3P31249 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms