Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.3■□□□□ 0.68
COL9A1P20849 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.3■□□□□ 0.68
COL9A1P20849 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.3■□□□□ 0.68
COL9A1P20849 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL9A1P20849 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
COL9A1P20849 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.3■□□□□ 0.68
COL9A1P20849 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC19.3■□□□□ 0.68
COL9A1P20849 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC19.3■□□□□ 0.68
COL9A1P20849 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 AC145285.3-201ENST00000564603 959 ntBASIC19.3■□□□□ 0.68
COL9A1P20849 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
COL9A1P20849 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC19.3■□□□□ 0.68
COL9A1P20849 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL9A1P20849 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.3■□□□□ 0.68
COL9A1P20849 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
COL9A1P20849 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
COL9A1P20849 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
COL9A1P20849 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
COL9A1P20849 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 AC104417.2-201ENST00000562989 1793 ntBASIC19.29■□□□□ 0.68
COL9A1P20849 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC19.29■□□□□ 0.68
COL9A1P20849 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC19.29■□□□□ 0.68
COL9A1P20849 KRT18P3-201ENST00000451602 1288 ntBASIC19.29■□□□□ 0.68
COL9A1P20849 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC19.29■□□□□ 0.68
COL9A1P20849 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.29■□□□□ 0.68
COL9A1P20849 AC138761.1-201ENST00000584393 385 ntBASIC19.29■□□□□ 0.68
COL9A1P20849 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.29■□□□□ 0.68
COL9A1P20849 Z69720.1-201ENST00000601483 472 ntBASIC19.29■□□□□ 0.68
COL9A1P20849 SERF2-217ENST00000630046 862 ntTSL 5 BASIC19.29■□□□□ 0.68
COL9A1P20849 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
COL9A1P20849 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.28■□□□□ 0.68
COL9A1P20849 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.28■□□□□ 0.68
COL9A1P20849 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 PMP22-202ENST00000395936 816 ntTSL 3 BASIC19.28■□□□□ 0.68
COL9A1P20849 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
COL9A1P20849 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.28■□□□□ 0.68
COL9A1P20849 AC190387.1-201ENST00000551683 408 ntBASIC19.28■□□□□ 0.68
COL9A1P20849 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.28■□□□□ 0.68
COL9A1P20849 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.28■□□□□ 0.68
COL9A1P20849 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19.28■□□□□ 0.68
COL9A1P20849 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL9A1P20849 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.28■□□□□ 0.68
COL9A1P20849 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 AC233702.3-201ENST00000578656 1387 ntBASIC19.28■□□□□ 0.68
COL9A1P20849 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL9A1P20849 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
COL9A1P20849 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.27■□□□□ 0.68
COL9A1P20849 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 NUS1P2-201ENST00000417358 873 ntBASIC19.27■□□□□ 0.68
COL9A1P20849 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC19.27■□□□□ 0.68
COL9A1P20849 AC018712.1-201ENST00000455767 687 ntBASIC19.27■□□□□ 0.68
COL9A1P20849 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL9A1P20849 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
COL9A1P20849 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms