Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL6A3P12111 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.59■□□□□ 0.73
COL6A3P12111 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A3P12111 AC002472.2-201ENST00000442739 958 ntBASIC19.58■□□□□ 0.73
COL6A3P12111 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC19.58■□□□□ 0.73
COL6A3P12111 GUSBP12-201ENST00000513727 720 ntBASIC19.58■□□□□ 0.73
COL6A3P12111 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
COL6A3P12111 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A3P12111 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A3P12111 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.58■□□□□ 0.73
COL6A3P12111 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
COL6A3P12111 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
COL6A3P12111 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.58■□□□□ 0.73
COL6A3P12111 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A3P12111 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC19.58■□□□□ 0.73
COL6A3P12111 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.73
COL6A3P12111 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC19.58■□□□□ 0.73
COL6A3P12111 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
COL6A3P12111 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A3P12111 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.58■□□□□ 0.72
COL6A3P12111 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
COL6A3P12111 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.58■□□□□ 0.72
COL6A3P12111 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC19.58■□□□□ 0.72
COL6A3P12111 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.58■□□□□ 0.72
COL6A3P12111 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A3P12111 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.58■□□□□ 0.72
COL6A3P12111 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.58■□□□□ 0.72
COL6A3P12111 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A3P12111 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
COL6A3P12111 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A3P12111 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
COL6A3P12111 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC19.57■□□□□ 0.72
COL6A3P12111 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.57■□□□□ 0.72
COL6A3P12111 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
COL6A3P12111 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A3P12111 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL6A3P12111 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A3P12111 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.57■□□□□ 0.72
COL6A3P12111 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A3P12111 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A3P12111 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A3P12111 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A3P12111 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A3P12111 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A3P12111 AC009947.1-201ENST00000444350 727 ntBASIC19.56■□□□□ 0.72
COL6A3P12111 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A3P12111 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A3P12111 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.56■□□□□ 0.72
COL6A3P12111 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A3P12111 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A3P12111 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC19.56■□□□□ 0.72
COL6A3P12111 C20orf181-201ENST00000623918 480 ntBASIC19.56■□□□□ 0.72
COL6A3P12111 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.56■□□□□ 0.72
COL6A3P12111 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A3P12111 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A3P12111 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A3P12111 TSEN15P1-201ENST00000423257 515 ntBASIC19.55■□□□□ 0.72
COL6A3P12111 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
COL6A3P12111 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A3P12111 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
COL6A3P12111 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A3P12111 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.55■□□□□ 0.72
COL6A3P12111 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A3P12111 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A3P12111 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A3P12111 MIR3180-5-201ENST00000583743 153 ntBASIC19.54■□□□□ 0.72
COL6A3P12111 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A3P12111 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A3P12111 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A3P12111 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A3P12111 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.54■□□□□ 0.72
COL6A3P12111 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
COL6A3P12111 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A3P12111 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC19.54■□□□□ 0.72
COL6A3P12111 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 AL390955.2-201ENST00000603032 514 ntBASIC19.54■□□□□ 0.72
COL6A3P12111 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 AF106564.1-201ENST00000607058 2553 ntBASIC19.54■□□□□ 0.72
COL6A3P12111 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A3P12111 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A3P12111 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
COL6A3P12111 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A3P12111 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A3P12111 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms