Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 VENTXP7-201ENST00000475503 772 ntBASIC20.72■□□□□ 0.91
COL6A1P12109 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A1P12109 TERC-201ENST00000602385 541 ntBASIC20.72■□□□□ 0.91
COL6A1P12109 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
COL6A1P12109 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
COL6A1P12109 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A1P12109 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.72■□□□□ 0.91
COL6A1P12109 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A1P12109 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A1P12109 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A1P12109 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.71■□□□□ 0.91
COL6A1P12109 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A1P12109 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL6A1P12109 POM121L3P-201ENST00000419331 1163 ntBASIC20.71■□□□□ 0.91
COL6A1P12109 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A1P12109 AC005104.2-201ENST00000427818 678 ntBASIC20.71■□□□□ 0.91
COL6A1P12109 HMGN1P19-201ENST00000436976 333 ntBASIC20.71■□□□□ 0.91
COL6A1P12109 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A1P12109 AC018712.1-201ENST00000455767 687 ntBASIC20.71■□□□□ 0.91
COL6A1P12109 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
COL6A1P12109 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A1P12109 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
COL6A1P12109 TEN1-204ENST00000588202 862 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A1P12109 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
COL6A1P12109 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC20.71■□□□□ 0.91
COL6A1P12109 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A1P12109 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.71■□□□□ 0.91
COL6A1P12109 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
COL6A1P12109 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A1P12109 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.71■□□□□ 0.91
COL6A1P12109 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A1P12109 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A1P12109 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.7■□□□□ 0.9
COL6A1P12109 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A1P12109 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
COL6A1P12109 AC093909.1-201ENST00000504731 1122 ntBASIC20.7■□□□□ 0.9
COL6A1P12109 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 PIN1-206ENST00000587625 878 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC20.7■□□□□ 0.9
COL6A1P12109 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A1P12109 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
COL6A1P12109 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.7■□□□□ 0.9
COL6A1P12109 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
COL6A1P12109 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A1P12109 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.69■□□□□ 0.9
COL6A1P12109 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 RPL13AP23-201ENST00000480739 586 ntBASIC20.69■□□□□ 0.9
COL6A1P12109 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC20.69■□□□□ 0.9
COL6A1P12109 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.69■□□□□ 0.9
COL6A1P12109 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A1P12109 MIR7706-201ENST00000613747 67 ntBASIC20.69■□□□□ 0.9
COL6A1P12109 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.69■□□□□ 0.9
COL6A1P12109 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
COL6A1P12109 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
COL6A1P12109 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
COL6A1P12109 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
COL6A1P12109 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 AC099778.1-201ENST00000568593 1911 ntBASIC20.68■□□□□ 0.9
COL6A1P12109 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.68■□□□□ 0.9
COL6A1P12109 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.68■□□□□ 0.9
COL6A1P12109 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.68■□□□□ 0.9
COL6A1P12109 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.68■□□□□ 0.9
COL6A1P12109 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC20.68■□□□□ 0.9
COL6A1P12109 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.68■□□□□ 0.9
COL6A1P12109 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.68■□□□□ 0.9
COL6A1P12109 AL049840.3-201ENST00000602669 611 ntBASIC20.68■□□□□ 0.9
COL6A1P12109 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
COL6A1P12109 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.68■□□□□ 0.9
COL6A1P12109 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL6A1P12109 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
COL6A1P12109 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
COL6A1P12109 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms