Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC22.17■■□□□ 1.14
HMGB1P09429 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
HMGB1P09429 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC22.16■■□□□ 1.14
HMGB1P09429 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC22.16■■□□□ 1.14
HMGB1P09429 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC22.16■■□□□ 1.14
HMGB1P09429 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC22.16■■□□□ 1.14
HMGB1P09429 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC22.16■■□□□ 1.14
HMGB1P09429 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC22.16■■□□□ 1.14
HMGB1P09429 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.16■■□□□ 1.14
HMGB1P09429 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC22.16■■□□□ 1.14
HMGB1P09429 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC22.16■■□□□ 1.14
HMGB1P09429 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
HMGB1P09429 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
HMGB1P09429 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC22.16■■□□□ 1.14
HMGB1P09429 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 AC079598.2-202ENST00000546624 1451 ntBASIC22.15■■□□□ 1.14
HMGB1P09429 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB1P09429 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC22.15■■□□□ 1.14
HMGB1P09429 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC22.15■■□□□ 1.14
HMGB1P09429 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB1P09429 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC22.15■■□□□ 1.14
HMGB1P09429 AL023284.2-201ENST00000405850 579 ntBASIC22.15■■□□□ 1.14
HMGB1P09429 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC22.15■■□□□ 1.14
HMGB1P09429 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC22.15■■□□□ 1.14
HMGB1P09429 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB1P09429 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HMGB1P09429 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC22.15■■□□□ 1.14
HMGB1P09429 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 AC112777.1-201ENST00000540175 1423 ntBASIC22.14■■□□□ 1.14
HMGB1P09429 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC22.14■■□□□ 1.14
HMGB1P09429 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC22.14■■□□□ 1.14
HMGB1P09429 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC22.14■■□□□ 1.14
HMGB1P09429 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
HMGB1P09429 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB1P09429 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC22.14■■□□□ 1.13
HMGB1P09429 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB1P09429 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC22.14■■□□□ 1.13
HMGB1P09429 MCCD1P1-208ENST00000445732 328 ntBASIC22.14■■□□□ 1.13
HMGB1P09429 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC22.14■■□□□ 1.13
HMGB1P09429 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
HMGB1P09429 AP000525.1-201ENST00000608286 694 ntBASIC22.14■■□□□ 1.13
HMGB1P09429 AL023803.3-201ENST00000615559 522 ntBASIC22.14■■□□□ 1.13
HMGB1P09429 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB1P09429 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC22.14■■□□□ 1.13
HMGB1P09429 AC073592.3-201ENST00000625118 1834 ntBASIC22.14■■□□□ 1.13
HMGB1P09429 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
HMGB1P09429 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
HMGB1P09429 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
HMGB1P09429 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC22.14■■□□□ 1.13
HMGB1P09429 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB1P09429 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB1P09429 KRT8P45-201ENST00000414328 1447 ntBASIC22.14■■□□□ 1.13
HMGB1P09429 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC22.14■■□□□ 1.13
HMGB1P09429 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
HMGB1P09429 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB1P09429 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGB1P09429 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
HMGB1P09429 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB1P09429 AC090164.3-201ENST00000610780 2143 ntBASIC22.13■■□□□ 1.13
HMGB1P09429 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB1P09429 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB1P09429 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB1P09429 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
HMGB1P09429 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC22.13■■□□□ 1.13
HMGB1P09429 AC008556.1-201ENST00000610908 2040 ntBASIC22.13■■□□□ 1.13
HMGB1P09429 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB1P09429 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HMGB1P09429 TSPY17P-201ENST00000450329 467 ntBASIC22.13■■□□□ 1.13
HMGB1P09429 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB1P09429 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.13■■□□□ 1.13
HMGB1P09429 GPAT2P1-201ENST00000444924 1672 ntBASIC22.13■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms