Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC20.6■□□□□ 0.89
VTNP04004 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
VTNP04004 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.6■□□□□ 0.89
VTNP04004 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 MIR564-202ENST00000385049 94 ntBASIC20.59■□□□□ 0.89
VTNP04004 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC20.59■□□□□ 0.89
VTNP04004 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC20.59■□□□□ 0.89
VTNP04004 KRT18P56-201ENST00000507275 550 ntBASIC20.59■□□□□ 0.89
VTNP04004 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.59■□□□□ 0.89
VTNP04004 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.59■□□□□ 0.89
VTNP04004 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.59■□□□□ 0.89
VTNP04004 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC20.59■□□□□ 0.89
VTNP04004 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC20.59■□□□□ 0.89
VTNP04004 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VTNP04004 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.59■□□□□ 0.89
VTNP04004 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.59■□□□□ 0.89
VTNP04004 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
VTNP04004 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VTNP04004 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
VTNP04004 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
VTNP04004 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VTNP04004 AL645929.1-201ENST00000420084 975 ntBASIC20.58■□□□□ 0.89
VTNP04004 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC20.58■□□□□ 0.89
VTNP04004 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
VTNP04004 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.58■□□□□ 0.89
VTNP04004 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.58■□□□□ 0.89
VTNP04004 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VTNP04004 MIR3917-201ENST00000580971 93 ntBASIC20.58■□□□□ 0.89
VTNP04004 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC20.58■□□□□ 0.89
VTNP04004 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VTNP04004 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VTNP04004 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VTNP04004 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
VTNP04004 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
VTNP04004 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.58■□□□□ 0.88
VTNP04004 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VTNP04004 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VTNP04004 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
VTNP04004 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.57■□□□□ 0.88
VTNP04004 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VTNP04004 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 CNP-204ENST00000472031 1019 ntTSL 2 BASIC20.57■□□□□ 0.88
VTNP04004 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
VTNP04004 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.57■□□□□ 0.88
VTNP04004 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC20.57■□□□□ 0.88
VTNP04004 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
VTNP04004 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
VTNP04004 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VTNP04004 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.56■□□□□ 0.88
VTNP04004 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.56■□□□□ 0.88
VTNP04004 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VTNP04004 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.56■□□□□ 0.88
VTNP04004 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
VTNP04004 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC20.56■□□□□ 0.88
VTNP04004 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC20.56■□□□□ 0.88
VTNP04004 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.56■□□□□ 0.88
VTNP04004 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.56■□□□□ 0.88
VTNP04004 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
VTNP04004 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.56■□□□□ 0.88
VTNP04004 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VTNP04004 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VTNP04004 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.55■□□□□ 0.88
VTNP04004 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VTNP04004 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
VTNP04004 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VTNP04004 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VTNP04004 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms