Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 AC007613.1-201ENST00000572811 2597 ntBASIC21.79■■□□□ 1.08
CTDNEP1O95476 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 AL390955.1-201ENST00000428694 934 ntBASIC21.79■■□□□ 1.08
CTDNEP1O95476 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 EFTUD1P1-204ENST00000560401 1798 ntBASIC21.79■■□□□ 1.08
CTDNEP1O95476 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CTDNEP1O95476 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.79■■□□□ 1.08
CTDNEP1O95476 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CTDNEP1O95476 MIR718-201ENST00000390190 70 ntBASIC21.78■■□□□ 1.08
CTDNEP1O95476 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.78■■□□□ 1.08
CTDNEP1O95476 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CTDNEP1O95476 AL355075.4-201ENST00000554988 638 ntBASIC21.78■■□□□ 1.08
CTDNEP1O95476 AP000525.1-201ENST00000608286 694 ntBASIC21.78■■□□□ 1.08
CTDNEP1O95476 AL023803.3-201ENST00000615559 522 ntBASIC21.78■■□□□ 1.08
CTDNEP1O95476 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.78■■□□□ 1.08
CTDNEP1O95476 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
CTDNEP1O95476 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CTDNEP1O95476 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
CTDNEP1O95476 MADD-208ENST00000405573 1823 ntTSL 5 BASIC21.78■■□□□ 1.08
CTDNEP1O95476 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 KRT8P45-201ENST00000414328 1447 ntBASIC21.77■■□□□ 1.08
CTDNEP1O95476 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.77■■□□□ 1.08
CTDNEP1O95476 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CTDNEP1O95476 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
CTDNEP1O95476 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 CA15P1-201ENST00000481698 905 ntBASIC21.76■■□□□ 1.07
CTDNEP1O95476 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 MIR4785-201ENST00000585005 73 ntBASIC21.76■■□□□ 1.07
CTDNEP1O95476 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
CTDNEP1O95476 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CTDNEP1O95476 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 FITM1-202ENST00000559294 800 ntBASIC21.75■■□□□ 1.07
CTDNEP1O95476 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CTDNEP1O95476 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC21.75■■□□□ 1.07
CTDNEP1O95476 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms