Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS4BO75351 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.43■□□□□ 0.54
VPS4BO75351 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS4BO75351 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.43■□□□□ 0.54
VPS4BO75351 TSPY21P-201ENST00000433481 731 ntBASIC18.43■□□□□ 0.54
VPS4BO75351 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS4BO75351 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS4BO75351 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VPS4BO75351 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
VPS4BO75351 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VPS4BO75351 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS4BO75351 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS4BO75351 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS4BO75351 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS4BO75351 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.42■□□□□ 0.54
VPS4BO75351 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 AL353708.3-201ENST00000610272 989 ntBASIC18.42■□□□□ 0.54
VPS4BO75351 AC005363.2-201ENST00000618631 242 ntBASIC18.42■□□□□ 0.54
VPS4BO75351 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 ANO7L1-203ENST00000602586 1720 ntBASIC18.42■□□□□ 0.54
VPS4BO75351 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS4BO75351 BICD1-207ENST00000551848 1962 ntBASIC18.42■□□□□ 0.54
VPS4BO75351 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VPS4BO75351 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS4BO75351 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS4BO75351 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS4BO75351 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC18.41■□□□□ 0.54
VPS4BO75351 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS4BO75351 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
VPS4BO75351 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
VPS4BO75351 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS4BO75351 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS4BO75351 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS4BO75351 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS4BO75351 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VPS4BO75351 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS4BO75351 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS4BO75351 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms